Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 9.7e-114 413.7 239 100.0
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 3.7e-113 411.8 239 99.6
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 2.6e-98 362.5 237 87.3
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 1.5e-82 310.1 235 81.3
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 1.9e-40 170.2 232 59.5
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 1.3e-36 157.5 239 56.9
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 9.9e-34 147.9 235 47.7
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 4.9e-33 145.6 235 40.9
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 7.4e-29 131.7 233 38.2
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 3.7e-28 129.4 240 46.7
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.4e-27 126.7 241 42.3
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 9.9e-26 121.3 239 39.7
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 4.9e-25 119.0 257 36.2
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 1.2e-23 114.4 235 36.2
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 1.2e-23 114.4 243 34.2
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 1.5e-21 107.5 253 32.8
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 3.3e-21 106.3 241 34.9
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 7.4e-21 105.1 223 40.4
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 1.3e-20 104.4 231 32.9
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 1.4e-19 100.9 218 34.4
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 1.8e-19 100.5 196 46.9
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 1.2e-18 97.8 235 33.2
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 1.0e-17 94.7 101 51.5
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 1.4e-16 90.9 232 31.9
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 2.5e-16 90.1 227 31.7
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 2.5e-16 90.1 237 32.9
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 4.2e-16 89.4 201 42.3
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 3.5e-15 86.3 230 32.2
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 6.0e-15 85.5 234 38.0
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 1.3e-14 84.3 234 30.3
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.3e-14 84.3 117 43.6
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 1.8e-14 84.0 256 39.5
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 2.3e-14 83.6 237 30.8
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.3e-14 83.6 245 33.1
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 2.3e-14 83.6 232 31.9
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 3.0e-14 83.2 234 29.5
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 3.9e-14 82.8 235 33.2
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 6.7e-14 82.0 252 40.9
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 6.7e-14 82.0 259 32.4
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 8.7e-14 81.6 235 37.4
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 5.7e-13 79.0 230 34.3
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 7.4e-13 78.6 232 31.9
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 1.6e-12 77.4 226 27.4
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 2.2e-12 77.0 231 29.4
TWI18G0336 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 2.2e-12 77.0 147 36.7
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 2.8e-12 76.6 241 29.5
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 4.8e-12 75.9 235 28.1
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 4.8e-12 75.9 236 31.4
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 4.8e-12 75.9 236 31.4
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 6.3e-12 75.5 227 29.1
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 1.1e-11 74.7 235 31.1
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 1.1e-11 74.7 237 30.0
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 1.1e-11 74.7 225 36.4
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 1.4e-11 74.3 235 31.9
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 2.4e-11 73.6 248 38.7
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.6e-10 70.1 241 30.3
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 5.9e-10 68.9 234 27.8
Sabra01G0042900 Salix brachista HOM05D007269 ORTHO05D008531 5.9e-10 68.9 88 48.9
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 7.7e-10 68.6 232 31.0
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 2.2e-09 67.0 247 31.2
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 2.2e-09 67.0 234 27.8
Oeu001328.1 Olea europaea HOM05D007269 ORTHO05D008531 5.0e-09 65.9 264 28.4
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 6.5e-09 65.5 231 29.0
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 6.5e-09 65.5 196 29.1
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 8.5e-09 65.1 237 29.5
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 8.5e-09 65.1 230 29.1
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 1.4e-08 64.3 223 28.7
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 2.5e-08 63.5 230 29.6
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 5.5e-08 62.4 202 28.2
ECA232G3539 Erigeron canadensis HOM05D007269 ORTHO05D008531 5.5e-08 62.4 130 33.1
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 5.5e-08 62.4 230 29.1
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 7.2e-08 62.0 248 27.8
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 9.4e-08 61.6 230 29.6
Os12g0460100 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 2.1e-07 60.5 250 25.6
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 2.7e-07 60.1 238 26.9
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 3.6e-07 59.7 232 27.2
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 3.6e-07 59.7 230 28.7
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 3.6e-07 59.7 243 26.3
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 7.9e-07 58.5 225 28.9
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 1.0e-06 58.2 230 27.4
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.0e-06 58.2 230 27.4
MELO3C022330.2 Cucumis melo HOM05D026927 ORTHO05D008531 1.4e-06 57.8 177 28.8
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 2.3e-06 57.0 250 28.0
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 2.3e-06 57.0 74 37.8
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 5.1e-06 55.8 137 32.1
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 5.1e-06 55.8 194 29.4
Atru.chr11.2371 Acer truncatum HOM05D007269 ORTHO05D051934 6.7e-06 55.5 26 92.3
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 6.7e-06 55.5 228 26.8


User provided reference genes

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