Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 0.0e+00 1650.2 838 100.0
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 0.0e+00 1642.1 838 99.4
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 0.0e+00 1342.4 842 84.4
RcHm_v2.0_Chr4g0412661 Rosa chinensis HOM05D007138 ORTHO05D009148 0.0e+00 1169.5 867 72.3
MD04G1019900 Malus domestica HOM05D007138 ORTHO05D009148 4.5e-206 722.2 876 51.9
Prupe.1G169400 Prunus persica HOM05D007138 ORTHO05D009148 1.9e-188 663.7 893 49.5
QL06p027005 Quercus lobata HOM05D007138 ORTHO05D009148 3.0e-109 400.6 856 38.1
Haze_11677 Corylus avellana HOM05D007138 ORTHO05D009148 3.1e-106 390.6 718 39.1
CiPaw.01G114100 Carya illinoinensis HOM05D007138 ORTHO05D009148 2.4e-95 354.4 780 36.0
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 9.6e-92 342.4 915 35.2
Cfa008656 Carpinus fangiana HOM05D007138 ORTHO05D009148 1.5e-89 335.1 706 37.5
Duzib151G0530 Durio zibethinus HOM05D007138 ORTHO05D009148 1.1e-79 302.4 893 33.3
Potri.002G236300 Populus trichocarpa HOM05D007138 ORTHO05D009148 9.3e-79 299.3 927 32.4
CANSAT78G1621 Cannabis sativa HOM05D007138 ORTHO05D009148 1.0e-77 295.8 883 32.3
Dinv27178 Davidia involucrata HOM05D007138 ORTHO05D009148 1.5e-76 292.0 500 42.4
Gohir.D09G201200 Gossypium hirsutum HOM05D007138 ORTHO05D009148 5.3e-74 283.5 888 32.3
Gohir.A09G207700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 2.0e-73 281.6 884 30.8
Gorai.006G224900 Gossypium raimondii HOM05D007138 ORTHO05D009148 2.2e-72 278.1 891 32.2
TAR365G0398 Trochodendron aralioides HOM05D007138 ORTHO05D009148 6.1e-70 270.0 513 40.4
GSVIVG01031579001 Vitis vinifera HOM05D007138 ORTHO05D009148 3.9e-69 267.3 462 40.3
Sabra02G0180000 Salix brachista HOM05D007138 ORTHO05D009148 5.1e-69 266.9 768 32.4
Atru.chr3.1784 Acer truncatum HOM05D007138 ORTHO05D009148 9.1e-66 256.1 379 43.8
Manes.01G054400 Manihot esculenta HOM05D007138 ORTHO05D009148 1.5e-65 255.4 698 30.8
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 3.2e-63 247.7 420 40.5
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 3.9e-61 240.7 718 30.2
Gohir.D02G019900 Gossypium hirsutum HOM05D007138 ORTHO05D009148 1.5e-60 238.8 866 29.7
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 2.0e-60 238.4 366 43.4
Gorai.005G025100 Gossypium raimondii HOM05D007138 ORTHO05D009148 6.3e-59 233.4 868 29.6
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 2.0e-57 228.4 883 29.4
Gohir.A02G017700 Gossypium hirsutum HOM05D007138 ORTHO05D009148 2.2e-56 224.9 872 29.0
Eucgr.H02635 Eucalyptus grandis HOM05D007138 ORTHO05D009148 7.2e-55 219.9 808 28.7
ClCG06G003170 Citrullus lanatus HOM05D007138 ORTHO05D009148 2.7e-54 218.0 853 29.4
Glyma.08G107400 Glycine max HOM05D007138 ORTHO05D009148 2.7e-54 218.0 745 31.3
Glyma.05G150500 Glycine max HOM05D007138 ORTHO05D009148 4.7e-54 217.2 747 30.8
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 1.4e-53 215.7 733 29.9
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 8.8e-53 213.0 732 29.6
AUR62020894 Chenopodium quinoa HOM05D007138 ORTHO05D009148 8.8e-53 213.0 432 36.6
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 1.2e-52 212.6 771 29.4
Hund25334 Selenicereus undatus HOM05D007138 ORTHO05D009148 5.7e-52 210.3 482 34.9
Sc13g0000510 Simmondsia chinensis HOM05D007138 ORTHO05D009148 3.7e-51 207.6 527 35.3
Nn1g08135 Nelumbo nucifera HOM05D007138 ORTHO05D009148 6.3e-51 206.8 513 34.5
Cpa.g.sc157.22 Carica papaya HOM05D007138 ORTHO05D009148 5.3e-50 203.8 455 36.7
AUR62018524 Chenopodium quinoa HOM05D007138 ORTHO05D009148 7.0e-50 203.4 471 35.2
Cc03_g09210 Coffea canephora HOM05D007138 ORTHO05D009148 2.9e-48 198.0 568 33.5
Medtr8g083310 Medicago truncatula HOM05D007138 ORTHO05D009148 2.9e-48 198.0 704 28.0
EL10Ac3g07428 Beta vulgaris HOM05D007138 ORTHO05D009148 1.9e-47 195.3 453 34.0
SalBow2G2858 Salvia bowleyana HOM05D007138 ORTHO05D009148 2.7e-46 191.4 508 33.9
Oeu034315.1 Olea europaea HOM05D007138 ORTHO05D009148 4.7e-46 190.7 540 30.7
CsaV3_6G009270 Cucumis sativus L. HOM05D007138 ORTHO05D009148 1.0e-45 189.5 515 31.8
Psat0s4823g0040 Pisum sativum HOM05D007138 ORTHO05D009148 2.3e-45 188.3 380 37.1
SalBow2G0985 Salvia bowleyana HOM05D007138 ORTHO05D009148 4.0e-45 187.6 418 36.4
Lj4g0024791 Lotus japonicus HOM05D007138 ORTHO05D009148 5.2e-45 187.2 817 28.9
Lsat_1_v5_gn_6_59601 Lactuca sativa HOM05D007138 ORTHO05D009148 6.8e-45 186.8 437 33.9
Sed0014888 Sechium edule HOM05D007138 ORTHO05D009148 6.8e-45 186.8 800 29.6
THA.LOC104804782 Tarenaya hassleriana HOM05D007138 ORTHO05D009148 8.8e-45 186.4 443 35.9
Ca_18004_v3 Cicer arietinum L. HOM05D007138 ORTHO05D009148 1.2e-44 186.0 705 29.1
Aqoxy2G03906 Aquilegia oxysepala HOM05D007138 ORTHO05D009148 2.0e-44 185.3 808 30.1
Sp3g21450 Schrenkiella parvula HOM05D007138 ORTHO05D009148 3.4e-44 184.5 414 34.3
Phvul.003G291400 Phaseolus vulgaris HOM05D007138 ORTHO05D009148 4.4e-44 184.1 706 30.2
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 5.7e-44 183.7 385 36.4
Lalb_Chr12g0205841 Lupinus albus HOM05D007138 ORTHO05D009148 2.2e-43 181.8 392 36.2
PGR083G1257 Punica granatum HOM05D007138 ORTHO05D009148 1.4e-42 179.1 724 28.7
BcaB06g26533 Brassica carinata HOM05D007138 ORTHO05D009148 2.4e-42 178.3 378 35.7
Migut.G00946 Erythranthe guttata HOM05D007138 ORTHO05D009148 2.4e-42 178.3 500 30.0
A07p08650 Brassica napus HOM05D007138 ORTHO05D009148 1.3e-40 172.6 432 33.3
BraA07t28655Z Brassica rapa HOM05D007138 ORTHO05D009148 1.3e-40 172.6 432 33.3
Thhalv10002448m.g Eutrema salsugineum HOM05D007138 ORTHO05D009148 1.7e-40 172.2 540 30.2
AL3G38640 Arabidopsis lyrata HOM05D007138 ORTHO05D009148 2.9e-40 171.4 426 32.4
BcaC06g35563 Brassica carinata HOM05D007138 ORTHO05D009148 5.0e-40 170.6 368 35.6
ECA233G0560 Erigeron canadensis HOM05D007138 ORTHO05D009148 5.0e-40 170.6 530 32.1
PGSC0003DMG400021869 Solanum tuberosum HOM05D007138 ORTHO05D009148 6.5e-40 170.2 933 25.9
VMungo0251G1281 Vigna mungo HOM05D007138 ORTHO05D009148 6.5e-40 170.2 891 27.2
AT3G23740 Arabidopsis thaliana HOM05D007138 ORTHO05D009148 8.5e-40 169.9 398 34.4
Nitab4.5_0000037g0170 Nicotiana tabacum HOM05D007138 ORTHO05D009148 1.1e-39 169.5 942 26.4
Carub.0003s2404 Capsella rubella HOM05D007138 ORTHO05D009148 2.8e-38 164.9 405 35.8
CARHR099730 Cardamine hirsuta HOM05D007138 ORTHO05D009148 2.8e-38 164.9 389 35.0
C07p13480 Brassica napus HOM05D007138 ORTHO05D009148 3.6e-38 164.5 368 35.3
BolC7t41843H Brassica oleracea HOM05D007138 ORTHO05D009148 3.6e-38 164.5 368 35.3
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 3.6e-38 164.5 159 53.5
Ah.04g149560 Amaranthus hybridus HOM05D001269 ORTHO05D001083 2.3e-37 161.8 447 32.0
MELO3C021153.2 Cucumis melo HOM05D007138 ORTHO05D009148 3.0e-37 161.4 178 52.2
Solyc09g092510.3 Solanum lycopersicum HOM05D007138 ORTHO05D009148 3.0e-37 161.4 943 26.3
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 6.8e-37 160.2 943 25.8
HanXRQChr02g0058451 Helianthus annuus HOM05D007138 ORTHO05D009148 3.7e-35 154.5 527 29.2
Peaxi162Scf00286g01047 Petunia axillaris HOM05D007138 ORTHO05D009148 3.7e-35 154.5 869 24.7
unitig_747.g21666 Utricularia gibba HOM05D007138 ORTHO05D009148 1.1e-31 142.9 353 32.3
Lsat_1_v5_gn_6_58941 Lactuca sativa HOM05D007138 ORTHO05D009148 4.7e-30 137.5 924 24.9
Zm00001eb334100 Zea mays HOM05D007138 ORTHO05D009148 3.4e-28 131.3 124 51.6
Aa31LG8G10280 Aethionema arabicum HOM05D007138 ORTHO05D009148 6.4e-27 127.1 277 35.4
Os01g0101800 Oryza sativa ssp. japonica HOM05D007138 ORTHO05D009148 1.1e-26 126.3 125 51.2
Oeu056444.1 Olea europaea HOM05D007138 ORTHO05D009148 6.6e-24 117.1 466 27.3
Zm00001eb127090 Zea mays HOM05D007138 ORTHO05D009148 3.6e-22 111.3 107 50.5
Nn1g02395 Nelumbo nucifera HOM05D007138 ORTHO05D009148 1.8e-21 109.0 295 31.2
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 1.2e-20 106.3 136 41.9
CDE09G0581 Ceratophyllum demersum HOM05D007138 ORTHO05D009148 2.3e-16 92.0 369 29.8
ATR0561G013 Amborella trichopoda HOM05D007138 ORTHO05D009148 1.5e-15 89.4 115 43.5
Atru.chr3.1785 Acer truncatum HOM05D007138 ORTHO05D009148 3.7e-11 74.7 331 29.9
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 3.2e-10 71.6 127 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 9.2e-10 70.1 112 37.5
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 5.1e-08 64.3 132 35.6
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 5.1e-08 64.3 106 34.9
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 5.6e-07 60.8 158 31.6
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 5.6e-07 60.8 60 45.0
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 5.6e-07 60.8 159 26.4
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 2.1e-06 58.9 134 35.1
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.1e-06 58.9 143 28.0
Ciclev10006158m.g Citrus clementina HOM05D007138 ORTHO05D009148 2.8e-06 58.5 114 33.3
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 8.1e-06 57.0 119 33.6
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 8.1e-06 57.0 152 29.6
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 8.1e-06 57.0 109 31.2


User provided reference genes

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