Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.0e-234 814.3 391 100.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 4.5e-233 810.8 391 99.5
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 9.0e-226 786.6 391 96.7
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.7e-224 782.3 391 96.2
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.5e-223 778.5 398 95.5
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.5e-201 706.1 392 87.2
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 6.1e-166 587.8 393 73.0
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.7e-152 543.1 396 67.9
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 1.0e-144 517.3 389 64.5
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.9e-143 513.1 391 62.7
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 1.2e-140 503.8 395 64.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 5.8e-140 501.5 394 65.2
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 2.2e-139 499.6 396 64.1
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.1e-138 497.3 391 64.5
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.1e-138 497.3 388 62.4
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.6e-137 493.4 390 60.8
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 2.1e-137 493.0 385 65.2
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.7e-137 492.7 386 65.3
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.0e-136 490.7 398 59.3
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 6.6e-136 488.0 387 61.5
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.5e-135 486.1 396 60.6
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 5.6e-135 485.0 395 62.0
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 7.3e-135 484.6 397 61.0
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 2.8e-134 482.6 392 59.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.8e-133 479.9 390 59.7
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 4.0e-133 478.8 395 59.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 6.8e-133 478.0 393 61.6
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 2.0e-132 476.5 398 59.8
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 2.6e-132 476.1 398 61.3
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 3.4e-132 475.7 393 59.0
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 4.4e-132 475.3 384 60.2
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 7.6e-132 474.6 398 61.3
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 1.3e-131 473.8 387 57.9
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 1.7e-131 473.4 391 61.1
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.2e-131 473.0 395 61.0
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 8.4e-131 471.1 384 63.0
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.1e-130 470.7 397 60.5
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.4e-130 470.3 387 60.7
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 1.2e-129 467.2 390 60.0
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 2.1e-129 466.5 389 61.2
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 4.6e-129 465.3 383 60.3
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 4.6e-129 465.3 397 58.7
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 6.6e-128 461.5 397 58.4
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 8.7e-128 461.1 379 60.2
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 4.3e-127 458.8 394 58.4
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 7.3e-127 458.0 383 59.3
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 7.3e-127 458.0 383 59.3
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 1.6e-126 456.8 374 61.0
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 3.6e-126 455.7 389 58.6
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 2.4e-125 453.0 387 59.9
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 3.1e-125 452.6 385 59.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 5.3e-125 451.8 385 58.4
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.2e-124 450.7 385 58.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 2.0e-124 449.9 391 57.0
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.4e-124 448.7 390 60.0
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 5.8e-124 448.4 387 59.4
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 7.6e-124 448.0 388 56.4
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 9.9e-124 447.6 385 57.9
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 2.9e-123 446.0 392 57.1
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 8.4e-123 444.5 386 56.0
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.9e-122 443.4 391 56.5
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 5.4e-122 441.8 376 60.9
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.7e-121 439.5 369 59.9
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 6.6e-120 434.9 428 51.9
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.1e-119 434.1 400 56.2
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.5e-119 433.7 318 67.0
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 1.1e-117 427.6 336 63.1
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 4.0e-117 425.6 391 55.5
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.5e-116 423.7 362 60.2
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 9.9e-116 421.0 389 56.0
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 9.9e-116 421.0 406 54.9
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 1.9e-114 416.8 395 55.9
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.6e-113 413.7 368 57.1
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 3.9e-112 409.1 311 65.6
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 5.6e-111 405.2 393 53.7
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 7.4e-111 404.8 391 51.9
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.8e-110 402.1 440 49.5
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 6.2e-110 401.7 391 52.4
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.1e-106 391.0 400 51.0
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.8e-101 373.6 372 54.8
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 4.1e-101 372.5 409 50.4
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 3.4e-100 369.4 397 50.4
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.6e-94 350.5 282 61.0
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 5.0e-91 339.0 228 71.1
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.4e-90 337.4 327 53.8
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 7.2e-90 335.1 316 55.4
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 9.4e-90 334.7 416 46.6
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 7.9e-89 331.6 298 55.0
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 3.7e-86 322.8 320 54.4
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 3.1e-85 319.7 388 46.1
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 6.9e-85 318.5 334 51.8
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.4e-82 310.8 392 44.9
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 1.4e-82 310.8 465 40.0
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 2.8e-78 296.6 384 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 4.1e-77 292.7 311 49.8
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 6.1e-73 278.9 277 49.8
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 3.6e-65 253.1 278 50.0
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.5e-60 236.5 161 65.8
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 7.7e-60 235.3 250 50.0
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.5e-55 221.1 306 44.1
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 2.0e-55 220.7 126 78.6
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 5.7e-55 219.2 233 48.9
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 2.8e-54 216.9 229 47.2
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.8e-54 216.9 294 41.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 6.3e-54 215.7 142 69.7
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 4.1e-53 213.0 291 41.9
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 2.9e-51 206.8 264 45.1
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 1.9e-50 204.1 110 84.5
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.9e-44 182.6 150 57.3
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 9.5e-42 175.3 112 68.8
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.0e-40 171.8 122 60.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 4.4e-39 166.4 102 70.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 2.9e-38 163.7 89 82.0
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.1e-37 161.8 192 43.2
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-37 159.8 93 76.3
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 2.8e-33 147.1 140 54.3
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 5.1e-27 126.3 111 55.9
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 3.3e-26 123.6 87 60.9
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 4.1e-21 106.7 63 73.0
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 2.3e-19 100.9 213 32.4
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.5e-18 97.4 88 59.1
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-17 95.1 102 46.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 1.2e-17 95.1 102 46.1
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 3.4e-15 87.0 50 72.0
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.8e-15 86.3 90 45.6
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 2.1e-12 77.8 60 55.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 7.8e-12 75.9 57 57.9
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 7.8e-12 75.9 78 52.6
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-11 74.7 49 67.3
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 3.0e-11 73.9 171 31.6
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 3.0e-11 73.9 171 31.6
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 4.3e-10 70.1 49 61.2
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 1.4e-08 65.1 111 36.0
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 1.2e-07 62.0 147 31.3
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 5.8e-07 59.7 85 36.5
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 9.9e-07 58.9 225 25.8


User provided reference genes

Program Settings