Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4103 Fragaria x ananassa HOM05D000051 ORTHO05D022692 5.5e-124 447.6 218 100.0
FvH4_4g14850 Fragaria vesca HOM05D000051 ORTHO05D022692 2.1e-91 339.3 218 79.8
FAN04G0467 Fragaria x ananassa HOM05D000051 ORTHO05D022692 6.6e-69 264.6 214 65.0
RcHm_v2.0_Chr4g0417391 Rosa chinensis HOM05D000051 ORTHO05D000015 1.7e-64 250.0 273 54.2
RcHm_v2.0_Chr4g0417401 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-63 247.3 280 52.1
RcHm_v2.0_Chr4g0417361 Rosa chinensis HOM05D000051 ORTHO05D022692 3.9e-61 238.8 280 51.1
FAN07G1332 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.5e-60 236.1 254 55.9
FAN22G0915 Fragaria x ananassa HOM05D000051 ORTHO05D022692 8.4e-56 221.1 137 81.0
FAN17G3135 Fragaria x ananassa HOM05D001480 ORTHO05D022692 1.0e-48 197.6 476 34.9
FAN22G1383 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.9e-33 145.2 231 42.9
RcHm_v2.0_Chr4g0417411 Rosa chinensis HOM05D000051 ORTHO05D000015 5.5e-31 138.7 289 37.4
FAN17G2114 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.3e-27 125.2 292 35.3
Prupe.4G158900 Prunus persica HOM05D000051 ORTHO05D000015 1.4e-23 114.0 291 32.0
FAN04G3175 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-22 110.9 160 42.5
FAN25G1937 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.1e-22 110.2 175 41.7
FAN20G0264 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.7e-22 109.0 173 41.0
MD03G1253700 Malus domestica HOM05D000051 ORTHO05D000015 6.1e-22 108.6 148 43.9
FAN16G3673 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.0e-21 107.8 175 41.7
RcHm_v2.0_Chr6g0309621 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-21 107.8 170 41.2
RcHm_v2.0_Chr2g0115721 Rosa chinensis HOM05D000051 ORTHO05D000015 1.8e-21 107.1 175 37.7
FvH4_3g33400 Fragaria vesca HOM05D000051 ORTHO05D000015 2.3e-21 106.7 175 41.1
FAN24G1734 Fragaria x ananassa HOM05D000051 ORTHO05D046548 3.0e-21 106.3 170 40.6
Prupe.4G158800 Prunus persica HOM05D000051 ORTHO05D000015 7.4e-20 101.7 307 29.3
MD11G1266000 Malus domestica HOM05D000051 ORTHO05D000015 1.3e-19 100.9 292 31.5
MD03G1246000 Malus domestica HOM05D000051 ORTHO05D000015 3.1e-18 96.3 292 30.1
FvH4_7g28000 Fragaria vesca HOM05D000051 ORTHO05D000015 9.1e-18 94.7 180 36.1
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 1.2e-17 94.4 301 28.6
MD11G1275600 Malus domestica HOM05D000051 ORTHO05D000015 1.2e-17 94.4 152 37.5
RcHm_v2.0_Chr7g0192741 Rosa chinensis HOM05D000051 ORTHO05D000015 2.6e-17 93.2 112 49.1
RcHm_v2.0_Chr5g0029291 Rosa chinensis HOM05D000051 ORTHO05D000015 3.5e-17 92.8 295 29.2
RcHm_v2.0_Chr5g0060771 Rosa chinensis HOM05D000051 ORTHO05D000015 4.5e-17 92.4 170 37.6
FvH4_3g21190 Fragaria vesca HOM05D000051 ORTHO05D000015 1.7e-16 90.5 230 30.4
RcHm_v2.0_Chr6g0304711 Rosa chinensis HOM05D000051 ORTHO05D000015 1.7e-16 90.5 157 39.5
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 2.2e-16 90.1 149 38.3
FAN06G4287 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.0e-16 89.0 180 35.0
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.0e-16 89.0 195 32.3
FvH4_3g17060 Fragaria vesca HOM05D000051 ORTHO05D000015 6.5e-16 88.6 195 32.3
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 6.5e-16 88.6 182 37.9
MD03G1253500 Malus domestica HOM05D000051 ORTHO05D000015 1.1e-15 87.8 151 37.1
RcHm_v2.0_Chr5g0028471 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-15 87.8 151 41.1
RcHm_v2.0_Chr5g0028411 Rosa chinensis HOM05D000051 ORTHO05D000015 1.5e-15 87.4 161 37.3
MD11G1256200 Malus domestica HOM05D000051 ORTHO05D000015 1.9e-15 87.0 288 30.2
MD11G1266900 Malus domestica HOM05D000051 ORTHO05D000015 1.9e-15 87.0 260 29.2
FvH4_3g33430 Fragaria vesca HOM05D000051 ORTHO05D000015 2.5e-15 86.7 157 36.3
MD03G1255400 Malus domestica HOM05D000051 ORTHO05D000015 2.5e-15 86.7 252 29.4
MD11G1266800 Malus domestica HOM05D000051 ORTHO05D000015 2.5e-15 86.7 284 28.5
FAN03G0619 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-15 86.3 152 38.2
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 3.2e-15 86.3 185 32.4
Prupe.4G151700 Prunus persica HOM05D000051 ORTHO05D000015 5.5e-15 85.5 153 35.9
FvH4_5g24470 Fragaria vesca HOM05D012937 ORTHO05D000015 7.2e-15 85.1 150 36.0
FAN12G2810 Fragaria x ananassa HOM05D000564 ORTHO05D004145 7.2e-15 85.1 54 77.8
FAN18G0789 Fragaria x ananassa HOM05D012937 ORTHO05D000015 7.2e-15 85.1 152 36.2
FAN25G3081 Fragaria x ananassa HOM05D000051 ORTHO05D000015 9.4e-15 84.7 183 36.1
MD11G1267000 Malus domestica HOM05D000051 ORTHO05D000015 9.4e-15 84.7 164 37.2
FAN19G2798 Fragaria x ananassa HOM05D000051 ORTHO05D010714 1.2e-14 84.3 158 36.1
FvH4_1g09890 Fragaria vesca HOM05D000051 ORTHO05D000015 1.6e-14 84.0 158 36.1
RcHm_v2.0_Chr5g0060761 Rosa chinensis HOM05D000051 ORTHO05D000015 2.1e-14 83.6 157 36.9
RcHm_v2.0_Chr7g0237071 Rosa chinensis HOM05D000051 ORTHO05D000015 2.1e-14 83.6 181 35.9
FvH4_3g33390 Fragaria vesca HOM05D000051 ORTHO05D000015 3.6e-14 82.8 148 36.5
FAN11G3894 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.7e-14 82.4 146 34.9
RcHm_v2.0_Chr5g0028581 Rosa chinensis HOM05D000051 ORTHO05D000015 4.7e-14 82.4 197 32.5
FAN10G1889 Fragaria x ananassa HOM05D000051 ORTHO05D000015 8.0e-14 81.6 168 36.3
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 1.0e-13 81.3 151 36.4
MD11G1274900 Malus domestica HOM05D000051 ORTHO05D000015 1.4e-13 80.9 187 35.3
FvH4_2g37070 Fragaria vesca HOM05D000051 ORTHO05D000015 1.8e-13 80.5 156 36.5
FAN01G1280 Fragaria x ananassa HOM05D000051 ORTHO05D017957 2.3e-13 80.1 159 35.2
FvH4_3g17580 Fragaria vesca HOM05D000051 ORTHO05D000015 4.0e-13 79.3 302 29.1
FAN16G3202 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.0e-13 79.3 276 28.6
RcHm_v2.0_Chr4g0416371 Rosa chinensis HOM05D000051 ORTHO05D000015 4.0e-13 79.3 148 39.2
FAN05G4322 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.2e-13 79.0 153 36.6
MD11G1266700 Malus domestica HOM05D000051 ORTHO05D000015 5.2e-13 79.0 301 26.2
FvH4_6g07500 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-12 77.8 153 35.9
FAN14G2385 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-12 77.8 153 35.9
FAN17G0415 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.5e-12 77.4 147 35.4
FAN23G0111 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.5e-12 77.4 189 33.3
MD03G1252900 Malus domestica HOM05D000051 ORTHO05D000015 1.5e-12 77.4 196 29.6
FvH4_7g28011 Fragaria vesca HOM05D000051 ORTHO05D000015 2.0e-12 77.0 152 34.2
FAN10G3157 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.6e-12 76.6 150 35.3
RcHm_v2.0_Chr5g0028521 Rosa chinensis HOM05D000051 ORTHO05D000015 2.6e-12 76.6 164 36.6
FAN04G2306 Fragaria x ananassa HOM05D012937 ORTHO05D000015 3.3e-12 76.3 126 34.9
FvH4_3g17190 Fragaria vesca HOM05D000051 ORTHO05D000015 4.4e-12 75.9 194 30.4
FAN02G3071 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.7e-12 75.5 153 35.3
FAN03G3040 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.5e-12 75.1 151 37.1
FAN08G2405 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.5e-12 75.1 281 28.1
FAN25G2060 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.5e-12 75.1 162 34.0
FAN13G1655 Fragaria x ananassa HOM05D012937 ORTHO05D000015 9.7e-12 74.7 180 30.0
FAN11G1258 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.3e-11 74.3 194 29.9
FAN25G2557 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.7e-11 73.9 208 32.2
MD03G1253200 Malus domestica HOM05D000051 ORTHO05D000015 1.7e-11 73.9 178 28.1
RcHm_v2.0_Chr5g0028201 Rosa chinensis HOM05D000051 ORTHO05D000015 2.2e-11 73.6 277 27.1
RcHm_v2.0_Chr5g0028451 Rosa chinensis HOM05D000051 ORTHO05D000015 2.2e-11 73.6 194 29.9
FvH4_3g17581 Fragaria vesca HOM05D000051 ORTHO05D000015 2.8e-11 73.2 272 27.9
FvH4_3g33370 Fragaria vesca HOM05D000051 ORTHO05D000015 2.8e-11 73.2 156 34.6
FAN11G2886 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.8e-11 73.2 272 27.9
FAN16G1794 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.8e-11 73.2 194 29.4
FAN06G2306 Fragaria x ananassa HOM05D000051 ORTHO05D017957 3.7e-11 72.8 163 36.2
FAN06G4717 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.8e-11 72.4 163 36.2
RcHm_v2.0_Chr4g0387591 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-10 71.2 164 31.7
FAN28G2792 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.4e-10 70.9 134 38.1
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 1.8e-10 70.5 171 31.0
FAN09G0905 Fragaria x ananassa HOM05D007743 ORTHO05D000015 2.4e-10 70.1 136 34.6
FvH4_1g00860 Fragaria vesca HOM05D000051 ORTHO05D000015 4.1e-10 69.3 130 34.6
FAN21G3599 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.0e-10 68.6 148 35.1
FAN15G0574 Fragaria x ananassa HOM05D000051 ORTHO05D046548 1.2e-09 67.8 117 40.2
RcHm_v2.0_Chr5g0028241 Rosa chinensis HOM05D000051 ORTHO05D000015 1.2e-09 67.8 153 32.7
FAN10G3451 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.6e-09 67.4 79 49.4
FvH4_2g40800 Fragaria vesca HOM05D000051 ORTHO05D000015 2.7e-09 66.6 169 33.7
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 3.5e-09 66.2 245 27.8
FAN16G1804 Fragaria x ananassa HOM05D000051 ORTHO05D000015 4.5e-09 65.9 193 29.5
MD11G1265000 Malus domestica HOM05D000051 ORTHO05D000015 5.9e-09 65.5 170 31.2
RcHm_v2.0_Chr5g0028481 Rosa chinensis HOM05D000051 ORTHO05D000015 5.9e-09 65.5 190 31.6
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 5.9e-09 65.5 170 30.0
RcHm_v2.0_Chr5g0028511 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-08 64.7 166 30.7
RcHm_v2.0_Chr5g0028551 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-08 64.3 166 31.9
FvH4_3g17160 Fragaria vesca HOM05D000051 ORTHO05D000015 1.7e-08 63.9 169 30.8
Prupe.4G161000 Prunus persica HOM05D000051 ORTHO05D000015 1.7e-08 63.9 176 33.0
FAN11G3342 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.2e-08 63.5 159 31.4
FAN23G2828 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.2e-08 63.5 126 34.1
MD11G1265300 Malus domestica HOM05D000051 ORTHO05D000015 2.2e-08 63.5 161 30.4
FvH4_3g18021 Fragaria vesca HOM05D000051 ORTHO05D000015 2.9e-08 63.2 117 37.6
FAN27G1573 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.9e-08 63.2 92 41.3
RcHm_v2.0_Chr7g0197921 Rosa chinensis HOM05D000051 ORTHO05D000015 3.8e-08 62.8 107 33.6
FAN17G2497 Fragaria x ananassa HOM05D000572 ORTHO05D000840 5.0e-08 62.4 39 74.4
FAN26G3357 Fragaria x ananassa HOM05D000051 ORTHO05D000015 5.0e-08 62.4 157 31.8
FAN28G0582 Fragaria x ananassa HOM05D012937 ORTHO05D000015 5.0e-08 62.4 152 32.2
GSVIVG01038076001 Vitis vinifera HOM05D000051 ORTHO05D000015 5.0e-08 62.4 241 27.4
FAN16G1403 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.5e-08 62.0 128 33.6
Prupe.4G161200 Prunus persica HOM05D000051 ORTHO05D000015 6.5e-08 62.0 166 29.5
FvH4_5g02290 Fragaria vesca HOM05D000051 ORTHO05D000015 1.1e-07 61.2 168 25.6
FAN18G3141 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.1e-07 61.2 168 25.6
FvH4_5g02221 Fragaria vesca HOM05D000051 ORTHO05D000015 1.5e-07 60.8 228 24.1
RcHm_v2.0_Chr5g0028261 Rosa chinensis HOM05D000051 ORTHO05D000015 1.9e-07 60.5 283 26.1
FvH4_3g20210 Fragaria vesca HOM05D000051 ORTHO05D000015 4.2e-07 59.3 159 30.8
RcHm_v2.0_Chr5g0030631 Rosa chinensis HOM05D000051 ORTHO05D000015 5.5e-07 58.9 103 36.9
FAN04G3087 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.2e-07 58.5 303 26.4
FAN18G4561 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.2e-07 58.5 248 25.4
FAN20G2836 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.2e-07 58.5 198 30.3
FvH4_5g02230 Fragaria vesca HOM05D000051 ORTHO05D000015 9.4e-07 58.2 165 27.9
FvH4_5g35600 Fragaria vesca HOM05D000051 ORTHO05D000015 9.4e-07 58.2 246 25.6
RcHm_v2.0_Chr7g0197881 Rosa chinensis HOM05D000051 ORTHO05D000015 9.4e-07 58.2 173 29.5
FvH4_3g17100 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-06 57.8 158 31.0
FvH4_3g21162 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-06 57.8 149 34.2
FvH4_5g02210 Fragaria vesca HOM05D000051 ORTHO05D000015 1.2e-06 57.8 163 24.5
FAN11G3946 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-06 57.8 158 31.0
FAN25G1230 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.2e-06 57.8 154 30.5
FvH4_3g17090 Fragaria vesca HOM05D000051 ORTHO05D000015 1.6e-06 57.4 99 34.3
FvH4_3g32940 Fragaria vesca HOM05D000051 ORTHO05D000015 1.6e-06 57.4 74 44.6
FAN18G3549 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.6e-06 57.4 163 24.5
TPR.G9098 Trifolium pratense HOM05D000051 ORTHO05D000015 2.1e-06 57.0 218 28.4
Thhalv10015884m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 2.7e-06 56.6 159 30.8
FvH4_7g28040 Fragaria vesca HOM05D000051 ORTHO05D017957 2.7e-06 56.6 87 39.1
vmacro14310 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 3.6e-06 56.2 172 31.4
FAN25G3744 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.1e-06 55.5 162 30.2


User provided reference genes

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