Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.4e-56 222.6 107 100.0
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-56 222.6 107 100.0
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.4e-56 222.6 107 100.0
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-56 221.5 107 99.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-56 221.5 107 99.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.6e-55 219.2 107 98.1
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 7.8e-55 216.9 107 96.3
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.0e-51 204.5 105 90.5
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 2.0e-50 202.2 105 89.5
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 3.4e-50 201.4 105 89.5
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 4.4e-50 201.1 105 89.5
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.9e-48 195.7 107 85.0
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 4.1e-48 194.5 105 86.7
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.1e-47 192.2 107 84.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.5e-47 191.4 107 84.1
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.6e-47 191.0 107 84.1
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 82.2
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 7.8e-47 190.3 107 83.2
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.0e-46 189.9 107 83.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.0e-46 188.3 107 80.4
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 5.1e-46 187.6 107 82.2
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 81.3
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 80.4
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 2.5e-45 185.3 107 80.4
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.5e-45 185.3 105 81.0
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 79.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 3.3e-45 184.9 107 79.4
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.3e-45 184.5 107 78.5
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 4.3e-45 184.5 106 81.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 79.4
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.6e-45 184.1 107 79.4
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 9.5e-45 183.3 107 80.4
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 9.5e-45 183.3 105 82.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.2e-44 183.0 107 79.4
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 80.0
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.6e-44 182.6 105 81.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.1e-44 182.2 107 78.5
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 79.4
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 78.5
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 78.5
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 79.4
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 79.4
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 79.4
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.8e-44 181.8 107 78.5
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 3.6e-44 181.4 107 78.5
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 3.6e-44 181.4 105 79.0
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.6e-44 181.4 106 80.2
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.7e-44 181.0 104 80.8
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.7e-44 181.0 106 80.2
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 6.2e-44 180.6 107 78.5
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 6.2e-44 180.6 105 79.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 78.5
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 8.1e-44 180.3 105 80.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 8.1e-44 180.3 107 78.5
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.4e-43 179.5 106 79.2
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 77.6
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 76.6
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 79.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 76.6
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 77.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 2.4e-43 178.7 104 77.9
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 78.1
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 3.1e-43 178.3 107 73.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.0e-43 177.9 106 77.4
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 4.0e-43 177.9 107 75.7
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.2e-43 177.6 103 79.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 5.2e-43 177.6 107 74.8
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.8e-43 177.2 104 76.9
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 8.9e-43 176.8 105 79.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 8.9e-43 176.8 105 76.2
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 75.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.2e-42 176.4 107 76.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.2e-42 176.4 105 76.2
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 78.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 77.1
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.5e-42 176.0 105 77.1
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 75.0
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 76.9
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.5e-42 176.0 104 76.9
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 75.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 2.0e-42 175.6 101 81.2
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 2.0e-42 175.6 101 81.2
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 104 76.9
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.0e-42 175.6 105 78.1
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.0e-42 175.6 103 78.6
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.6e-42 175.3 105 77.1
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 75.7
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-42 174.9 107 77.6
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.4e-42 174.5 104 76.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.4e-42 174.5 105 77.1
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 4.4e-42 174.5 107 73.8
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 4.4e-42 174.5 106 76.4
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 9.9e-42 173.3 104 76.0
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 103 75.7
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.7e-41 172.6 98 79.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 73.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.9e-41 171.8 107 72.9
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 73.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.8e-41 171.4 107 73.8
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.9e-41 171.0 107 72.9
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.9e-41 171.0 104 73.1
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.9e-41 171.0 109 74.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.4e-41 170.6 98 77.6
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.4e-41 170.6 107 72.9
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 8.4e-41 170.2 107 72.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.1e-40 169.9 98 77.6
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-40 169.9 107 72.9
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 72.9
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 72.0
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 72.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.9e-40 169.1 107 72.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 3.2e-40 168.3 104 72.1
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 4.1e-40 167.9 105 74.3
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.1e-40 167.2 107 72.0
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 71.0
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 69.2
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.5e-39 164.9 110 72.7
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 1.3e-38 162.9 104 69.2
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.3e-38 162.9 108 72.2
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.7e-38 162.5 104 72.1
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.3e-38 162.2 107 70.1
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 2.3e-38 162.2 110 68.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 3.0e-38 161.8 104 71.2
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 8.6e-38 160.2 103 68.9
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.3e-37 158.3 105 70.5
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 4.3e-37 157.9 105 65.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.6e-36 156.0 88 78.4
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 4.7e-36 154.5 105 65.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.8e-35 152.5 86 76.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.4e-35 152.1 105 63.8
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 4.0e-35 151.4 169 49.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.5e-34 149.4 106 62.3
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 9.9e-34 146.7 82 84.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 3.8e-33 144.8 106 63.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.3e-30 136.3 78 75.6
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.0e-30 135.2 106 63.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.1e-29 133.3 100 63.0
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-29 132.1 80 76.2
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.3e-29 131.3 95 62.1
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.3e-28 129.8 102 59.8
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.1e-27 125.2 103 58.3
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 4.0e-27 124.8 72 73.6
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 9.0e-27 123.6 65 83.1
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.2e-25 119.0 82 64.6
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 2.4e-24 115.5 95 50.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.3e-22 109.0 73 68.5
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 3.3e-21 105.1 67 74.6
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.6e-21 104.4 92 47.8
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 7.4e-21 104.0 63 77.8
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 8.1e-20 100.5 71 64.8
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.4e-19 99.0 63 74.6
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 5.3e-19 97.8 69 66.7
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 2.0e-18 95.9 59 76.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.9e-17 92.0 63 71.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.8e-17 91.7 54 74.1
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 4.9e-17 91.3 60 71.7
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.1e-16 90.1 92 42.4
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.4e-16 89.7 106 46.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.3e-16 87.0 55 69.1
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-14 83.2 51 72.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.3e-14 83.2 55 69.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 6.7e-14 80.9 45 75.6
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 8.2e-12 73.9 65 56.9
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.5e-10 68.2 44 65.9
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 2.3e-06 55.8 86 37.2


User provided reference genes

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