Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.0e-131 473.4 235 100.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 5.0e-131 471.1 235 99.6
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.4e-125 451.1 233 95.7
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.2e-124 449.9 235 95.3
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.9e-122 442.6 235 94.9
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.7e-94 349.7 244 77.5
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 7.2e-53 211.5 245 52.7
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 5.7e-50 201.8 246 52.0
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 5.0e-46 188.7 248 48.0
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.1e-45 187.6 231 49.4
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.1e-45 187.6 229 51.5
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.2e-45 185.7 231 51.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 8.0e-44 181.4 257 45.9
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 5.2e-43 178.7 234 49.6
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.7e-41 173.7 233 47.6
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 6.3e-41 171.8 227 49.3
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 8.2e-41 171.4 244 45.1
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 8.2e-41 171.4 241 47.3
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.1e-40 171.0 256 45.7
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.8e-40 170.2 238 48.7
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 9.1e-40 167.9 252 44.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.0e-39 166.8 240 47.5
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 2.0e-39 166.8 252 43.7
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.9e-39 165.2 248 48.4
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.0e-38 164.5 239 46.4
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 1.3e-38 164.1 241 46.1
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 2.2e-38 163.3 255 43.5
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 2.9e-38 162.9 280 43.6
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.9e-38 162.9 246 43.9
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.9e-38 162.9 239 45.6
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 5.0e-38 162.2 240 45.4
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.0e-38 162.2 276 41.7
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 8.5e-38 161.4 242 43.4
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-37 161.0 239 43.1
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.9e-37 160.2 232 48.7
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 2.5e-37 159.8 241 43.6
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 3.2e-37 159.5 243 48.1
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 3.2e-37 159.5 228 44.7
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 4.2e-37 159.1 269 42.8
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.5e-37 158.7 241 45.2
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 7.2e-37 158.3 252 43.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 2.7e-36 156.4 217 47.0
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.7e-36 156.4 236 44.1
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 3.6e-36 156.0 252 42.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 4.7e-36 155.6 251 43.0
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.4e-35 154.1 250 42.4
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.3e-35 153.3 222 43.7
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 3.0e-35 152.9 253 41.5
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 8.8e-35 151.4 241 44.4
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-34 151.0 245 42.0
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.2e-34 151.0 239 43.1
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 9.8e-34 147.9 269 43.1
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.8e-34 147.9 246 41.9
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 9.8e-34 147.9 226 44.2
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 2.2e-33 146.7 238 42.9
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 2.8e-33 146.4 245 40.0
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 4.8e-33 145.6 222 41.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.1e-32 144.4 202 46.5
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 3.1e-32 142.9 213 43.7
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 7.0e-32 141.7 227 44.1
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.6e-31 140.6 226 42.9
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.0e-31 140.2 226 45.6
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 3.5e-31 139.4 259 37.8
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 4.5e-31 139.0 226 45.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 4.5e-31 139.0 249 42.6
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 5.9e-31 138.7 242 39.7
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.9e-31 138.7 242 41.3
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.3e-30 137.5 242 40.9
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.2e-30 136.7 226 44.7
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 3.2e-29 132.9 259 40.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.2e-29 132.5 231 39.8
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.2e-29 132.5 224 39.7
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.5e-29 132.1 240 40.8
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 5.5e-29 132.1 242 40.5
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.5e-29 131.3 244 39.3
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.6e-28 130.6 229 40.2
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 2.1e-28 130.2 243 40.7
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.7e-28 129.0 261 37.9
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.0e-27 127.9 221 42.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.0e-27 127.9 244 41.0
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.4e-27 127.5 220 41.4
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.8e-27 127.1 232 41.4
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.3e-27 126.7 240 42.1
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 4.0e-27 125.9 231 41.6
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 5.2e-27 125.6 241 40.2
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 6.8e-27 125.2 231 42.0
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 6.8e-27 125.2 233 41.2
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 6.8e-27 125.2 231 39.8
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 7.5e-26 121.7 222 40.1
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 9.8e-26 121.3 230 39.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.3e-25 120.9 249 39.0
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.7e-25 120.6 234 41.0
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.7e-25 120.6 223 39.5
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.7e-25 120.6 244 39.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.8e-25 119.8 235 39.6
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.4e-24 116.7 238 35.7
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.1e-24 116.3 235 39.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 3.1e-24 116.3 239 37.7
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.7e-23 113.2 239 36.8
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 4.5e-23 112.5 232 37.5
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 7.7e-23 111.7 232 37.5
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 8.6e-22 108.2 241 36.5
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.1e-21 107.8 227 37.9
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.5e-21 107.5 236 36.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 3.3e-21 106.3 218 37.2
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 7.3e-21 105.1 229 35.8
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.6e-20 104.0 246 35.4
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.1e-20 103.6 218 35.3
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 2.1e-20 103.6 133 48.1
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 4.0e-19 99.4 218 39.9
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 8.9e-19 98.2 195 36.9
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 3.4e-18 96.3 225 36.9
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 4.9e-17 92.4 229 34.5
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.4e-16 90.9 227 35.7
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.8e-16 90.5 246 33.7
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 1.8e-16 90.5 239 34.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.8e-16 90.5 242 34.3
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 3.2e-16 89.7 231 33.3
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 3.2e-16 89.7 231 33.3
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 3.2e-16 89.7 231 33.3
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 4.1e-16 89.4 226 32.7
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 3.5e-15 86.3 106 46.2
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 7.8e-15 85.1 106 47.2
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.0e-14 84.7 106 45.3
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 3.9e-14 82.8 106 44.3
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 3.9e-14 82.8 163 35.0
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 5.0e-14 82.4 235 32.8
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.0e-14 82.4 106 46.2
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.6e-12 77.4 210 32.9
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 1.6e-12 77.4 215 33.5
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 2.8e-12 76.6 165 34.5
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 2.8e-12 76.6 106 44.3
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.8e-12 76.6 223 33.6
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 3.6e-12 76.3 95 47.4
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 4.7e-12 75.9 210 32.4
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 6.2e-12 75.5 236 32.2
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.2e-12 75.5 223 33.2
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 3.1e-11 73.2 236 30.9
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 8.9e-11 71.6 246 31.3
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 9.8e-10 68.2 243 30.0
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.7e-09 67.4 225 29.8
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-08 63.9 93 46.2
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 4.1e-08 62.8 94 42.6
QL12p025899 Quercus lobata HOM05D005081 ORTHO05D005506 7.8e-07 58.5 168 30.4
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 1.7e-06 57.4 193 31.1
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 8.6e-06 55.1 97 40.2


User provided reference genes

Program Settings