Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.3e-46 186.8 91 100.0
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.0e-31 138.3 67 98.5
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.7e-24 115.2 67 86.6
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.2e-19 99.8 48 100.0
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 4.5e-19 97.8 48 97.9
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 4.3e-14 81.3 50 76.0
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.3e-13 79.7 53 71.7
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 4.8e-13 77.8 58 67.2
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 4.8e-13 77.8 58 67.2
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 4.8e-13 77.8 58 67.2
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 4.8e-13 77.8 48 75.0
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 4.8e-13 77.8 48 75.0
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 4.8e-13 77.8 48 75.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 6.3e-13 77.4 48 77.1
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 6.3e-13 77.4 48 75.0
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 8.2e-13 77.0 48 75.0
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.2e-13 77.0 48 75.0
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.2e-13 77.0 48 75.0
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 8.2e-13 77.0 48 75.0
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 1.1e-12 76.6 51 70.6
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 1.4e-12 76.3 53 64.2
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.4e-12 76.3 48 72.9
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.8e-12 75.9 48 72.9
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.8e-12 75.9 48 72.9
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.8e-12 75.9 48 72.9
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.4e-12 75.5 48 72.9
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 2.4e-12 75.5 48 72.9
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 3.1e-12 75.1 51 68.6
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 4.1e-12 74.7 47 72.3
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 70.8
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 4.1e-12 74.7 48 72.9
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 5.3e-12 74.3 48 70.8
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 68.8
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 6.9e-12 73.9 49 67.3
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 68.8
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 6.9e-12 73.9 48 72.9
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 6.9e-12 73.9 48 72.9
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 6.9e-12 73.9 47 68.1
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 9.1e-12 73.6 48 72.9
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 9.1e-12 73.6 47 74.5
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 9.1e-12 73.6 48 66.7
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.2e-11 73.2 48 70.8
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.5e-11 72.8 48 70.8
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.5e-11 72.8 48 68.8
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.5e-11 72.8 48 68.8
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.5e-11 72.8 48 70.8
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 2.0e-11 72.4 47 72.3
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 70.8
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.0e-11 72.4 47 72.3
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 70.8
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.0e-11 72.4 48 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 2.6e-11 72.0 48 66.7
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.6e-11 72.0 48 68.8
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.6e-11 72.0 48 68.8
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.6e-11 72.0 48 68.8
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.6e-11 72.0 48 70.8
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 3.4e-11 71.6 48 68.8
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 3.4e-11 71.6 47 72.3
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 3.4e-11 71.6 48 68.8
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 3.4e-11 71.6 48 68.8
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 4.5e-11 71.2 48 68.8
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 4.5e-11 71.2 48 66.7
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 5.9e-11 70.9 48 68.8
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 5.9e-11 70.9 48 66.7
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 7.7e-11 70.5 48 66.7
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 7.7e-11 70.5 47 70.2
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.0e-10 70.1 48 66.7
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.0e-10 70.1 48 66.7
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 1.0e-10 70.1 48 66.7
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 1.0e-10 70.1 48 66.7
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.7e-10 69.3 48 64.6
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.2e-10 68.9 60 55.0
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.2e-10 68.9 48 66.7
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 5.0e-10 67.8 48 62.5
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 5.5e-09 64.3 48 64.6
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 3.6e-08 61.6 52 55.8
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 6.1e-08 60.8 48 60.4
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.5e-06 56.2 84 40.5
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 5.7e-06 54.3 43 62.8


User provided reference genes

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