Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.2e-62 243.0 129 100.0
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 1.2e-57 226.5 121 98.3
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 1.7e-56 222.6 121 97.5
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 1.1e-52 209.9 121 90.1
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 1.1e-50 203.4 121 85.1
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 5.0e-48 194.5 121 78.5
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 5.0e-48 194.5 121 78.5
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 1.1e-47 193.4 125 75.2
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 3.6e-46 188.3 113 85.8
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 4.7e-46 188.0 119 78.2
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 6.1e-46 187.6 119 78.2
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 6.1e-46 187.6 121 75.2
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 5.2e-45 184.5 112 83.0
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 5.7e-44 181.0 121 71.1
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 7.5e-44 180.6 121 73.6
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 7.5e-44 180.6 124 74.2
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 2.2e-43 179.1 121 70.2
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.2e-43 179.1 121 72.7
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 3.7e-43 178.3 121 72.7
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 4.8e-43 177.9 123 75.6
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 8.2e-43 177.2 121 71.9
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 8.2e-43 177.2 121 75.2
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 1.4e-42 176.4 121 75.2
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.8e-42 176.0 121 73.6
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 1.8e-42 176.0 121 72.7
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 1.8e-42 176.0 121 73.6
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.4e-42 175.6 121 72.7
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 3.1e-42 175.3 121 68.6
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.1e-42 174.9 121 72.7
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.1e-42 174.9 121 72.7
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 7.0e-42 174.1 129 66.7
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 7.0e-42 174.1 121 70.2
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 7.0e-42 174.1 121 68.6
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 9.1e-42 173.7 121 69.4
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 1.2e-41 173.3 121 69.4
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 1.6e-41 172.9 114 72.8
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 2.7e-41 172.2 121 69.4
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 3.5e-41 171.8 121 74.4
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 3.5e-41 171.8 121 66.9
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 3.5e-41 171.8 116 71.6
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 4.5e-41 171.4 123 69.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 4.5e-41 171.4 114 73.7
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 5.9e-41 171.0 114 73.7
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 5.9e-41 171.0 121 71.9
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 7.7e-41 170.6 121 68.6
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 7.7e-41 170.6 116 70.7
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 7.7e-41 170.6 121 68.6
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 1.0e-40 170.2 121 68.6
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 1.0e-40 170.2 117 70.9
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 2.9e-40 168.7 114 73.7
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 2.9e-40 168.7 123 65.9
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 3.8e-40 168.3 121 67.8
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 5.0e-40 167.9 121 68.6
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 8.5e-40 167.2 121 70.2
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 8.5e-40 167.2 121 69.4
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.1e-39 166.8 121 66.9
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 1.9e-39 166.0 112 74.1
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 2.5e-39 165.6 101 79.2
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 2.5e-39 165.6 112 73.2
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 7.2e-39 164.1 117 73.5
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 7.2e-39 164.1 121 70.2
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 7.2e-39 164.1 121 71.1
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.2e-38 163.3 121 66.9
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 6.1e-38 161.0 113 66.4
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 6.1e-38 161.0 146 60.3
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 1.0e-37 160.2 114 71.1
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 1.8e-37 159.5 104 75.0
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 3.0e-37 158.7 108 69.4
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 4.0e-37 158.3 112 67.0
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 6.8e-37 157.5 113 64.6
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 8.8e-37 157.1 113 64.6
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.2e-36 156.8 113 64.6
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.2e-36 156.8 121 62.8
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.5e-36 156.4 121 67.8
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 2.0e-36 156.0 114 65.8
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 2.6e-36 155.6 113 63.7
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 2.6e-36 155.6 118 61.0
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 2.6e-36 155.6 118 61.0
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 2.6e-36 155.6 104 76.0
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 2.6e-36 155.6 104 74.0
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 3.4e-36 155.2 113 63.7
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 3.4e-36 155.2 125 57.6
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 5.7e-36 154.5 115 62.6
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 7.5e-36 154.1 113 63.7
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 7.5e-36 154.1 113 62.8
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 1.3e-35 153.3 108 70.4
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 2.8e-35 152.1 109 66.1
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 4.8e-35 151.4 114 64.0
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 1.1e-34 150.2 95 72.6
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 1.1e-34 150.2 112 67.0
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 1.8e-34 149.4 121 62.8
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 1.8e-34 149.4 89 80.9
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 2.4e-34 149.1 114 60.5
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 4.1e-34 148.3 104 71.2
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 5.4e-34 147.9 107 71.0
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 9.1e-34 147.1 104 71.2
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 1.2e-33 146.7 106 65.1
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 2.0e-33 146.0 107 65.4
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 2.7e-33 145.6 104 72.1
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 2.7e-33 145.6 107 66.4
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 4.5e-33 144.8 112 64.3
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 4.5e-33 144.8 130 60.0
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 4.5e-33 144.8 110 68.2
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 5.9e-33 144.4 107 63.6
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.0e-32 143.7 109 63.3
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 2.3e-32 142.5 104 69.2
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 2.3e-32 142.5 114 63.2
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 2.9e-32 142.1 121 58.7
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 5.0e-32 141.4 99 71.7
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 6.5e-32 141.0 120 53.3
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 6.5e-32 141.0 90 75.6
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 2.5e-31 139.0 104 63.5
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 2.5e-31 139.0 105 64.8
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.2e-31 138.7 89 74.2
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 3.2e-31 138.7 85 75.3
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 3.2e-31 138.7 104 66.3
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 7.2e-31 137.5 105 65.7
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 9.5e-31 137.1 104 63.5
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 1.2e-30 136.7 109 56.9
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 2.8e-30 135.6 106 63.2
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 5.7e-28 127.9 124 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 7.5e-28 127.5 103 60.2
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 1.8e-26 122.9 101 56.4
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 4.1e-26 121.7 96 60.4
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 1.6e-25 119.8 93 62.4
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 5.9e-25 117.9 102 53.9
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 1.0e-24 117.1 109 58.7
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 4.7e-22 108.2 95 53.7
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 4.7e-22 108.2 70 75.7
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.3e-19 100.1 79 67.1
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.9e-19 98.2 70 70.0
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 1.7e-16 89.7 112 45.5
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 3.0e-16 89.0 56 75.0
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.3e-13 79.3 66 56.1
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 1.5e-12 76.6 109 40.4
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 5.8e-12 74.7 83 47.0
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 9.2e-10 67.4 52 61.5
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 2.0e-09 66.2 105 35.2
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 2.7e-09 65.9 100 34.0


User provided reference genes

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