Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.1e-67 258.8 124 100.0
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.1e-67 258.8 124 100.0
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 2.1e-67 258.8 124 100.0
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 2.1e-67 258.8 124 100.0
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.3e-66 256.1 124 99.2
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.9e-65 252.3 124 99.2
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 9.0e-63 243.4 131 91.6
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.1e-60 236.5 124 91.9
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 1.6e-59 232.6 123 90.2
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 89.4
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 2.7e-59 231.9 120 88.3
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 4.6e-59 231.1 123 89.4
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 4.6e-59 231.1 122 89.3
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 4.6e-59 231.1 123 87.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 7.9e-59 230.3 121 90.1
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.0e-58 229.9 126 88.9
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 87.8
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.3e-58 229.6 124 87.1
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 3.9e-58 228.0 124 86.3
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.5e-57 225.3 123 85.4
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.3e-57 224.9 124 84.7
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 3.3e-57 224.9 123 87.8
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 4.3e-57 224.6 124 84.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 4.3e-57 224.6 124 85.5
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 4.3e-57 224.6 124 87.1
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 7.4e-57 223.8 123 87.0
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 9.6e-57 223.4 123 86.2
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 9.6e-57 223.4 124 84.7
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 9.6e-57 223.4 124 83.9
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 1.3e-56 223.0 123 84.6
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 2.8e-56 221.9 124 84.7
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 3.7e-56 221.5 124 83.1
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 4.8e-56 221.1 126 84.9
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 8.2e-56 220.3 123 83.7
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 8.2e-56 220.3 123 86.2
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.8e-55 219.2 123 82.1
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 1.8e-55 219.2 124 83.1
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 2.4e-55 218.8 123 82.9
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 3.1e-55 218.4 123 82.9
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 4.1e-55 218.0 124 82.3
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.1e-55 218.0 124 82.3
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 4.1e-55 218.0 124 82.3
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 5.3e-55 217.6 120 87.5
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 83.7
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.9
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.2e-54 216.5 123 80.5
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.2e-54 216.5 124 82.3
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 1.5e-54 216.1 123 84.6
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 2.6e-54 215.3 124 79.8
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.6e-54 215.3 123 82.9
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.6e-54 215.3 124 82.3
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 7.6e-54 213.8 123 80.5
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 1.0e-53 213.4 123 82.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.0e-53 213.4 124 80.6
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 81.3
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 82.1
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 2.9e-53 211.8 115 84.3
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 78.9
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 3.8e-53 211.5 122 82.8
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 3.8e-53 211.5 115 83.5
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 5.0e-53 211.1 123 78.9
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 5.0e-53 211.1 124 79.8
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 5.0e-53 211.1 122 78.7
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 5.0e-53 211.1 123 78.9
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.1e-52 209.9 122 77.9
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.9e-52 209.1 115 81.7
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 4.2e-52 208.0 124 78.2
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 4.2e-52 208.0 115 81.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 4.2e-52 208.0 115 81.7
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 4.2e-52 208.0 115 80.0
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 4.2e-52 208.0 115 84.3
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 5.5e-52 207.6 123 78.9
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 9.3e-52 206.8 115 80.0
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 76.4
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 78.0
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.6e-51 206.1 115 81.7
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 77.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 3.5e-51 204.9 122 79.5
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 7.9e-51 203.8 122 82.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 7.9e-51 203.8 122 82.0
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.0e-50 203.4 115 81.7
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.0e-50 203.4 123 77.2
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 1.8e-50 202.6 115 80.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 3.0e-50 201.8 128 74.2
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 3.0e-50 201.8 124 77.4
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 5.1e-50 201.1 120 79.2
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 5.1e-50 201.1 124 77.4
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 1.5e-49 199.5 113 81.4
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 1.9e-49 199.1 115 80.9
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 1.9e-49 199.1 104 88.5
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.9e-49 199.1 124 76.6
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 2.5e-49 198.7 124 76.6
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 3.3e-49 198.4 133 71.4
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.3e-49 198.4 116 78.4
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 5.7e-49 197.6 118 76.3
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 4.8e-48 194.5 118 79.7
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 6.3e-48 194.1 105 85.7
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 8.2e-48 193.7 107 82.2
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.1e-47 193.4 106 84.9
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 1.4e-47 193.0 107 82.2
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 6.9e-47 190.7 105 81.9
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.2e-46 189.9 107 84.1
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 1.5e-46 189.5 106 81.1
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.6e-46 188.7 106 84.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.6e-46 188.7 106 84.0
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.3e-45 186.4 105 81.0
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.3e-45 186.4 104 81.7
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.7e-45 186.0 123 71.5
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 2.9e-45 185.3 123 73.2
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.1e-44 183.3 107 78.5
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 1.1e-44 183.3 107 81.3
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 4.2e-44 181.4 98 81.6
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 3.6e-43 178.3 106 79.2
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 6.1e-43 177.6 98 79.6
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 7.9e-43 177.2 112 74.1
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 1.4e-42 176.4 123 70.7
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 6.7e-42 174.1 116 70.7
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.5e-41 172.9 98 79.6
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 8.2e-40 167.2 98 77.6
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 8.2e-40 167.2 98 77.6
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 8.2e-40 167.2 98 77.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.1e-39 165.2 86 87.2
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.8e-34 149.4 107 69.2
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 2.6e-30 135.6 111 55.9
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.9e-29 132.1 95 65.3
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 6.5e-29 131.0 66 86.4
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.2e-28 127.5 115 56.5
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 2.3e-26 122.5 109 52.3
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 9.7e-25 117.1 65 81.5
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 1.7e-21 106.3 69 75.4
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 5.0e-21 104.8 57 86.0
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 1.5e-20 103.2 70 72.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 4.1e-15 85.1 65 60.0
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 7.7e-14 80.9 61 55.7
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 3.2e-12 75.5 44 68.2
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 5.2e-10 68.2 41 78.0
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 2.7e-06 55.8 26 88.5


User provided reference genes

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