Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.9e-119 432.6 224 100.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.1e-114 416.8 233 94.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 9.4e-95 350.5 224 85.3
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.8e-90 336.3 223 82.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 4.9e-83 311.6 217 77.9
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 9.2e-82 307.4 217 76.5
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.0e-81 306.2 226 75.7
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 3.5e-81 305.4 220 76.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.9e-79 299.7 223 73.1
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.3e-79 298.5 221 73.3
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 9.5e-79 297.4 220 72.7
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.6e-78 296.6 219 73.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-78 296.6 224 71.9
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.6e-78 295.4 222 72.5
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 6.2e-78 294.7 221 72.9
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 6.2e-78 294.7 222 72.5
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 6.2e-78 294.7 222 72.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.8e-77 293.1 216 72.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 8.9e-77 290.8 217 73.7
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.0e-76 289.7 218 71.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 9.8e-76 287.3 228 70.6
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-75 287.0 224 70.1
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.3e-75 287.0 223 70.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.7e-75 285.4 216 71.8
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.1e-74 283.9 221 71.5
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-74 283.1 215 70.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-74 283.1 215 70.7
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.9e-74 283.1 217 70.5
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 2.4e-74 282.7 221 71.0
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.4e-74 282.7 219 69.9
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.2e-74 282.3 205 73.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 9.2e-74 280.8 223 68.2
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 9.2e-74 280.8 220 70.0
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.2e-73 280.4 215 70.7
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.2e-73 280.4 213 71.8
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.6e-73 280.0 216 71.3
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.6e-73 280.0 215 70.7
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.0e-73 279.6 220 68.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.0e-73 279.6 226 69.0
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-73 279.3 215 69.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.5e-73 278.9 223 68.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.5e-73 278.9 213 70.9
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.6e-73 278.5 221 70.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 6.0e-73 278.1 217 71.4
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.8e-73 277.7 228 67.5
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.0e-72 277.3 232 65.5
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.3e-72 276.9 222 67.6
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.3e-72 276.2 224 68.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.3e-72 276.2 230 67.8
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.0e-72 275.8 220 66.4
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.9e-72 275.4 233 67.0
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 5.0e-72 275.0 220 66.4
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 5.0e-72 275.0 223 68.2
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 5.0e-72 275.0 224 67.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.0e-72 275.0 211 69.7
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 6.6e-72 274.6 220 65.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.6e-72 274.6 218 66.1
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.6e-72 274.6 218 66.1
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.6e-72 274.6 207 71.0
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 8.6e-72 274.2 219 66.7
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 8.6e-72 274.2 217 68.2
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.1e-71 273.9 218 69.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.1e-71 273.9 225 66.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-71 273.9 223 67.7
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.9e-71 273.1 220 65.9
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 3.3e-71 272.3 218 65.6
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.3e-71 272.3 218 65.1
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 3.3e-71 272.3 224 67.4
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.3e-71 272.3 220 65.5
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.3e-71 272.3 220 65.5
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-71 271.2 209 69.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 7.3e-71 271.2 216 68.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.2e-70 270.4 245 60.8
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-70 270.0 209 68.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.6e-70 270.0 216 67.6
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.1e-70 269.6 225 68.0
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 2.8e-70 269.2 216 67.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.8e-70 269.2 216 67.6
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 4.7e-70 268.5 222 65.8
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 4.7e-70 268.5 224 66.1
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.4e-69 266.9 207 68.6
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.4e-69 266.9 217 68.2
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.4e-69 266.9 214 66.4
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.4e-69 266.9 226 65.9
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.8e-69 266.5 222 66.7
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.8e-69 266.5 206 69.9
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.3e-69 266.2 221 64.3
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 4.0e-69 265.4 212 68.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.0e-69 265.4 222 65.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.0e-69 265.4 207 68.1
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 6.8e-69 264.6 220 65.9
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 6.8e-69 264.6 224 67.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-68 263.8 220 63.6
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.2e-68 263.8 220 63.6
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.2e-68 263.8 220 63.6
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.2e-68 263.8 220 63.6
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.2e-68 263.8 226 65.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.0e-68 263.1 232 64.2
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.4e-68 262.3 215 66.5
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 4.4e-68 261.9 243 61.7
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 9.8e-68 260.8 215 66.5
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 3.7e-67 258.8 224 63.4
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.9e-67 258.5 211 67.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.4e-66 256.9 221 64.3
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.4e-66 256.1 217 64.5
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.1e-66 255.4 221 64.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 7.1e-66 254.6 257 58.4
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.6e-65 253.4 220 63.2
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 6.0e-65 251.5 218 64.2
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.6e-63 245.0 217 62.7
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 6.2e-62 241.5 189 70.4
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-59 233.4 224 59.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.4e-58 230.3 197 65.5
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 7.1e-58 228.0 217 59.4
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.6e-57 226.9 197 65.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 3.0e-56 222.6 212 55.2
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 9.6e-55 217.6 218 55.5
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 2.1e-54 216.5 174 68.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.6e-54 215.7 211 54.5
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 6.2e-54 214.9 171 67.8
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 3.4e-52 209.1 162 70.4
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 7.6e-52 208.0 169 68.6
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 6.4e-51 204.9 162 69.1
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 5.4e-50 201.8 205 53.7
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.1e-49 199.9 211 59.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 7.8e-49 198.0 206 50.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.8e-45 186.8 169 62.7
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.4e-44 182.2 156 64.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.9e-43 179.5 171 60.2
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.2e-41 174.1 159 63.5
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 6.0e-41 171.8 99 85.9
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.3e-40 169.9 164 58.5
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.5e-39 167.2 143 65.0
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.9e-39 166.8 170 55.9
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-36 155.2 135 63.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.4e-34 149.8 84 86.9
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-33 147.5 142 59.2
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.7e-32 141.7 146 56.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 9.6e-31 137.9 90 81.1
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-30 137.5 82 82.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 8.1e-30 134.8 122 63.1
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 2.4e-29 133.3 199 38.7
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 6.9e-29 131.7 92 78.3
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 9.0e-29 131.3 94 76.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 1.1e-26 124.4 195 36.9
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.9e-26 123.6 101 65.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.2e-25 120.9 88 65.9
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.3e-24 117.5 204 33.8
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.1e-23 114.4 216 32.9
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.7e-22 109.4 135 50.4
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 1.1e-21 107.8 137 51.1
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 6.9e-21 105.1 108 56.5
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.5e-20 104.0 62 82.3
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-16 89.4 60 71.7
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 2.6e-12 76.6 47 83.0
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.9e-11 73.2 46 76.1
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.8e-11 72.8 132 40.9
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.5e-11 71.6 135 40.7
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.5e-11 71.6 135 40.7
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.2e-10 69.7 135 40.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 4.2e-10 69.3 135 40.0
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 1.6e-09 67.4 118 41.5
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.3e-07 59.7 36 77.8
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 9.7e-07 58.2 38 73.7


User provided reference genes

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