Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.3e-193 679.5 340 100.0
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.6e-191 672.5 340 99.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.6e-189 665.2 343 97.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.5e-187 657.5 343 97.1
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.1e-179 633.3 344 93.6
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-166 589.7 344 88.4
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-166 589.7 344 87.8
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 8.0e-162 573.9 338 84.6
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.8e-158 562.8 325 85.2
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 5.0e-156 554.7 321 83.2
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 5.0e-156 554.7 341 80.9
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 6.5e-156 554.3 344 81.1
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.1e-155 553.5 325 83.4
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.5e-155 553.1 349 78.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.2e-154 550.1 340 80.9
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.1e-154 549.3 342 80.1
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 3.6e-154 548.5 324 82.1
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.6e-154 548.5 357 77.9
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 4.7e-154 548.1 336 82.1
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.7e-154 548.1 325 81.8
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.8e-153 546.2 324 83.0
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.0e-152 542.7 325 80.9
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.4e-152 542.0 322 82.0
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 4.4e-152 541.6 344 79.9
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.8e-152 540.4 347 79.0
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 4.8e-151 538.1 326 81.3
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.3e-151 537.7 337 80.7
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.8e-150 536.2 346 77.7
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.8e-150 536.2 344 79.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.8e-150 536.2 356 76.7
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 4.1e-150 535.0 324 82.4
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 4.1e-150 535.0 332 81.0
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 7.0e-150 534.3 402 69.4
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.2e-149 533.5 335 78.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.5e-149 531.9 322 79.5
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.5e-149 531.9 330 78.8
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 4.5e-149 531.6 326 79.4
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 5.9e-149 531.2 328 79.3
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.0e-148 530.4 344 77.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.0e-148 530.4 324 80.2
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.0e-148 530.4 343 77.6
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.0e-148 530.4 349 76.5
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.3e-148 530.0 328 79.0
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.3e-148 530.0 344 77.0
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 5.0e-148 528.1 328 79.0
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 6.6e-148 527.7 343 77.3
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 6.6e-148 527.7 345 77.4
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 8.6e-148 527.3 315 83.5
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 8.6e-148 527.3 318 81.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.5e-147 526.6 345 77.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.3e-147 525.4 326 78.8
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 5.5e-147 524.6 326 78.5
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.1e-146 522.7 345 75.9
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.8e-146 522.3 326 78.2
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.8e-146 522.3 326 78.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.6e-146 521.9 337 77.2
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 8.0e-146 520.8 343 77.6
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.3e-145 519.2 308 84.7
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 3.0e-145 518.8 326 77.9
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.0e-145 518.8 307 81.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 3.0e-145 518.8 292 86.6
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-144 515.8 323 78.3
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.4e-144 515.4 341 75.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 7.5e-144 514.2 345 75.4
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 9.8e-144 513.8 325 78.2
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.3e-143 513.5 328 77.7
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.2e-143 512.7 324 78.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.8e-143 512.3 298 82.2
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.7e-143 511.9 324 78.4
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 6.3e-143 511.1 324 78.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 8.3e-143 510.8 325 77.8
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-142 510.4 345 74.2
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-142 510.4 345 74.2
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.8e-142 509.6 350 74.0
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-141 506.9 326 76.4
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.2e-141 506.9 353 73.9
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.6e-141 506.5 378 68.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.6e-141 506.5 299 81.3
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.0e-141 506.1 296 82.4
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.5e-141 505.4 317 78.5
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.5e-141 505.4 270 91.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.3e-140 503.4 337 76.9
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 3.9e-140 501.9 345 76.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 3.3e-139 498.8 337 76.9
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.3e-139 498.4 342 75.4
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.2e-138 496.9 290 82.8
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.8e-138 495.7 324 76.2
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.8e-138 495.7 342 74.0
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 6.1e-138 494.6 291 82.8
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.5e-136 490.0 324 75.9
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.4e-136 488.8 309 78.3
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 7.5e-136 487.6 337 72.4
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.5e-136 487.6 284 82.0
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.9e-135 485.7 345 73.0
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 8.3e-135 484.2 329 72.6
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 9.2e-134 480.7 310 75.5
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.6e-133 479.9 343 71.4
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 6.0e-133 478.0 302 76.5
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.8e-130 469.2 288 77.8
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.8e-129 466.5 343 68.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 4.4e-128 461.8 272 82.0
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.9e-127 458.4 342 69.9
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.1e-126 457.2 270 81.5
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.4e-126 456.1 355 69.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.6e-125 453.4 314 73.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.1e-125 453.0 301 76.4
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 6.0e-125 451.4 295 78.3
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 5.6e-123 444.9 334 70.4
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.6e-117 426.8 321 72.0
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.6e-116 421.4 286 70.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 9.6e-115 417.5 287 74.6
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 9.6e-115 417.5 254 81.5
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 8.1e-114 414.5 257 79.4
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.1e-113 412.5 287 71.1
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 5.2e-113 411.8 331 61.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.9e-111 406.0 272 71.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.2e-104 384.0 299 69.6
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 3.8e-103 379.0 267 73.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 6.2e-98 361.7 293 63.8
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.9e-91 340.1 228 75.0
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.1e-89 334.3 217 78.3
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 6.5e-87 325.1 238 73.5
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.1e-76 288.9 138 98.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.1e-68 262.3 337 48.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-66 257.7 153 80.4
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.3e-60 236.9 147 78.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 6.7e-60 235.3 182 66.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.9e-56 222.2 145 77.2
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 6.7e-52 208.8 132 74.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 7.5e-51 205.3 108 83.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.6e-48 197.6 108 80.6
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 6.5e-39 165.6 282 40.8
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 8.0e-37 158.7 112 67.0
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 4.0e-36 156.4 129 58.9
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.6e-32 144.4 259 34.7
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-31 141.4 117 59.8
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 8.0e-29 132.1 117 62.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.2e-24 118.2 295 32.2
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 4.3e-22 109.8 86 60.5
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 7.3e-22 109.0 87 59.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-19 101.3 92 59.8
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.5e-19 101.3 53 94.3
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 2.0e-19 100.9 93 60.2
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.2e-17 93.6 64 73.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 4.6e-16 89.7 52 78.8
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 2.3e-15 87.4 79 49.4
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.3e-15 87.4 53 69.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-14 85.1 53 73.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 8.3e-10 68.9 37 78.4
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.0e-07 62.0 31 90.3
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.7e-07 61.2 56 55.4
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 5.6e-06 56.2 35 80.0


User provided reference genes

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