Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.0e-60 236.5 117 100.0
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.8e-58 228.4 117 97.4
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.7e-58 228.0 120 96.7
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.0e-57 223.8 120 95.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 9.1e-49 196.8 120 84.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.8e-36 156.0 117 71.8
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.8e-34 148.7 114 68.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-32 142.1 84 85.7
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 7.8e-32 140.6 119 68.9
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.3e-28 129.0 89 76.4
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 3.0e-28 128.6 84 79.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.3e-23 112.5 119 57.1
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 5.0e-23 111.3 125 60.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 8.6e-23 110.5 128 59.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 4.7e-21 104.8 112 58.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.1e-20 103.6 108 54.6
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 2.3e-20 102.4 109 55.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 8.9e-20 100.5 108 57.4
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.0e-19 99.4 118 49.2
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 3.4e-19 98.6 130 55.4
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 3.4e-19 98.6 109 56.9
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 5.8e-19 97.8 109 56.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.5e-19 97.4 106 56.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.3e-18 96.7 119 55.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.7e-18 95.1 118 55.1
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.7e-18 95.1 116 52.6
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 8.3e-18 94.0 121 52.1
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 8.3e-18 94.0 106 57.5
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.3e-18 94.0 109 56.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.4e-17 93.2 121 49.6
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-17 93.2 114 55.3
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-17 93.2 107 52.3
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.4e-17 93.2 108 53.7
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.9e-17 92.8 115 49.6
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.9e-17 92.8 107 56.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.4e-17 92.4 111 55.9
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.4e-17 92.4 111 55.9
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.2e-17 92.0 107 51.4
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.2e-17 92.0 107 51.4
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.1e-17 91.7 115 51.3
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.4e-17 91.3 115 53.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.0e-17 90.9 119 48.7
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 9.2e-17 90.5 121 49.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-16 89.7 118 51.7
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.7e-16 89.0 114 50.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 2.7e-16 89.0 117 53.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.6e-16 88.2 114 50.9
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 4.6e-16 88.2 111 55.0
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.0e-16 87.8 114 50.0
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.0e-16 87.8 114 50.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.0e-15 87.0 114 51.8
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.0e-15 87.0 108 53.7
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.3e-15 86.7 108 50.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.7e-15 86.3 106 51.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.7e-15 86.3 126 50.8
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.0e-15 85.5 114 51.8
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.9e-15 85.1 123 50.4
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.1e-15 84.7 111 54.1
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 5.1e-15 84.7 111 52.3
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 8.6e-15 84.0 116 46.6
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 8.6e-15 84.0 116 46.6
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.6e-15 84.0 121 47.1
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 8.6e-15 84.0 101 47.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.1e-14 83.6 119 50.4
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 121 47.9
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.1e-14 83.6 105 49.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-14 82.8 112 49.1
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.5e-14 82.4 110 48.2
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.5e-14 82.4 121 47.1
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 3.3e-14 82.0 110 49.1
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.3e-14 82.0 108 50.9
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.3e-14 82.0 108 50.9
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 3.3e-14 82.0 106 46.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.3e-14 82.0 107 46.7
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 4.3e-14 81.6 116 52.6
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.6e-14 81.3 103 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.6e-14 81.3 118 46.6
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 5.6e-14 81.3 123 52.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 5.6e-14 81.3 120 54.2
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 5.6e-14 81.3 122 45.1
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.6e-14 81.3 106 48.1
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.3e-14 80.9 105 53.3
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 9.5e-14 80.5 106 52.8
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 9.5e-14 80.5 107 50.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.5e-14 80.5 126 46.0
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.6e-13 79.7 115 47.8
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.6e-13 79.7 121 52.1
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.6e-13 79.7 105 45.7
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.6e-13 79.7 99 52.5
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.8e-13 79.0 98 53.1
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.6e-13 78.6 112 47.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.6e-13 78.6 124 48.4
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.6e-13 78.6 129 45.0
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 4.7e-13 78.2 102 45.1
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.7e-13 78.2 116 47.4
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 6.2e-13 77.8 112 46.4
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 6.2e-13 77.8 112 47.3
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 6.2e-13 77.8 105 48.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.2e-13 77.8 96 52.1
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 8.1e-13 77.4 114 45.6
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.1e-13 77.4 110 49.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.1e-12 77.0 103 53.4
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.1e-12 77.0 114 43.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-12 77.0 105 46.7
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-12 76.6 112 46.4
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-12 76.6 102 51.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-12 76.6 105 46.7
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.4e-12 76.6 106 45.3
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-12 76.6 115 46.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 111 50.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.3e-12 75.9 105 44.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.1e-12 75.5 115 48.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.1e-12 75.5 115 47.8
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.1e-12 75.5 105 47.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.1e-12 75.5 109 45.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.0e-12 75.1 103 52.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.0e-12 75.1 107 45.8
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.0e-12 75.1 101 48.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.0e-12 75.1 104 46.2
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 8.9e-12 73.9 103 47.6
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.9e-12 73.9 110 45.5
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-11 73.6 110 44.5
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.2e-11 73.6 110 44.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-11 73.2 101 48.5
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.5e-11 73.2 110 44.5
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.5e-11 73.2 114 43.9
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.6e-11 72.4 111 49.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.6e-11 72.4 105 45.7
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-11 72.0 111 49.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-11 72.0 120 47.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.4e-11 72.0 108 43.5
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.4e-11 71.6 110 43.6
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.4e-11 71.6 105 43.8
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.8e-11 71.2 119 44.5
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.8e-11 71.2 103 46.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.8e-11 71.2 95 48.4
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 5.8e-11 71.2 116 41.4
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 9.9e-11 70.5 117 41.9
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 9.9e-11 70.5 118 41.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.3e-10 70.1 111 45.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.3e-10 70.1 103 46.6
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-10 70.1 117 42.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.7e-10 69.7 122 48.4
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 2.9e-10 68.9 115 42.6
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 3.7e-10 68.6 118 40.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 4.9e-10 68.2 118 40.7
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.9e-10 68.2 106 45.3
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 4.9e-10 68.2 123 47.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.9e-10 68.2 98 46.9
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.9e-10 68.2 104 45.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.4e-10 67.8 108 47.2
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 6.4e-10 67.8 102 46.1
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 6.4e-10 67.8 102 46.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 8.3e-10 67.4 107 43.0
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-09 67.0 123 42.3
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-09 66.6 118 39.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-09 66.6 132 42.4
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.4e-09 66.6 132 42.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.9e-09 66.2 110 41.8
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 4.1e-09 65.1 117 39.3
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 4.1e-09 65.1 117 39.3
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 4.1e-09 65.1 117 39.3
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 5.4e-09 64.7 116 44.8
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 5.4e-09 64.7 130 42.3
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 9.2e-09 63.9 118 38.1
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.2e-08 63.5 134 41.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.2e-08 63.5 105 42.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.5e-08 62.0 105 42.9
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 6.0e-08 61.2 98 40.8
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 7.8e-08 60.8 122 41.8
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 3.0e-07 58.9 109 39.4
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 6.6e-07 57.8 128 40.6
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.9e-06 56.2 112 37.5
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.5e-06 55.8 113 42.5
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 7.3e-06 54.3 93 41.9
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 9.5e-06 53.9 110 36.4


User provided reference genes

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