Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-278 960.3 490 100.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.2e-269 931.8 490 97.3
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.8e-263 909.8 491 93.9
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.1e-235 818.9 490 86.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-234 815.5 490 87.1
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.9e-182 641.3 432 81.0
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.6e-161 572.8 497 61.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.3e-161 572.4 505 61.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 5.7e-161 571.6 496 60.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 3.7e-160 568.9 505 61.0
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.4e-159 566.2 505 60.4
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.1e-159 565.8 500 60.0
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 4.1e-159 565.5 504 60.7
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.3e-159 565.1 500 59.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 5.3e-159 565.1 503 59.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 7.0e-159 564.7 500 60.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 7.0e-159 564.7 504 60.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.6e-158 562.8 497 60.4
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 5.9e-158 561.6 511 58.7
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.0e-157 560.8 496 60.1
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 1.0e-157 560.8 500 59.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.0e-157 560.8 495 59.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.3e-157 560.5 500 59.4
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-157 560.5 494 61.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.7e-157 560.1 503 60.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.7e-157 560.1 516 58.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.7e-157 560.1 500 59.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.7e-157 560.1 511 58.5
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.7e-157 560.1 493 60.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-157 559.7 495 59.0
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-157 559.7 495 59.0
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.2e-157 559.7 495 59.0
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.2e-157 559.7 499 60.9
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.2e-157 559.7 500 59.6
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.2e-157 559.7 504 58.7
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 2.9e-157 559.3 495 59.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 2.9e-157 559.3 495 59.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 3.8e-157 558.9 495 59.0
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.8e-157 558.9 498 61.8
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 5.0e-157 558.5 500 58.8
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 6.5e-157 558.1 495 59.0
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 8.5e-157 557.8 500 59.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.1e-156 557.4 505 59.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-156 557.4 491 61.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.1e-156 557.4 500 59.4
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.5e-156 557.0 495 58.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.5e-156 556.2 495 60.6
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.5e-156 556.2 504 59.3
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.2e-156 555.8 496 59.1
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-156 555.8 494 60.7
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 5.5e-156 555.1 504 58.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 9.4e-156 554.3 495 58.6
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 9.4e-156 554.3 504 57.5
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-155 553.9 495 58.6
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.2e-155 553.9 504 57.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.2e-155 553.9 504 59.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.7e-155 552.7 495 58.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.7e-155 552.7 495 59.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.7e-155 552.7 500 58.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.6e-155 552.4 500 59.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.6e-155 552.4 500 58.8
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 4.7e-155 552.0 504 58.5
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 6.1e-155 551.6 495 58.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.0e-154 550.8 496 59.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.0e-154 550.8 500 58.6
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.8e-154 550.1 503 59.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.3e-154 549.7 500 59.6
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 3.0e-154 549.3 496 58.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.0e-154 548.9 495 58.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.0e-154 548.9 496 58.7
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 8.8e-154 547.7 492 59.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.2e-153 547.4 529 55.6
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.2e-153 547.4 495 58.6
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-153 547.0 501 59.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.6e-153 546.2 504 56.3
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.7e-152 543.5 515 56.9
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-152 543.5 504 59.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 4.8e-152 542.0 496 58.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 6.3e-152 541.6 498 57.2
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.3e-152 541.2 496 59.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 8.3e-152 541.2 495 58.0
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-151 540.8 501 58.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.1e-151 540.8 503 57.9
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.4e-151 539.7 492 58.3
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.1e-151 539.3 514 57.4
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.1e-151 539.3 504 55.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.1e-151 539.3 495 57.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 5.4e-151 538.5 495 57.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 5.4e-151 538.5 524 55.2
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 9.1e-151 537.7 496 57.9
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.0e-150 536.6 495 57.6
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 7.7e-150 534.6 494 58.3
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 7.7e-150 534.6 476 58.2
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.7e-149 533.5 495 56.4
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 6.5e-149 531.6 508 55.7
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.5e-148 530.4 504 56.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.2e-148 528.9 505 55.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.7e-147 526.2 476 58.0
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-147 526.2 342 84.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.0e-146 524.2 504 55.4
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.3e-146 523.1 498 55.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.8e-146 521.5 507 56.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 8.8e-146 521.2 500 55.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-145 520.4 491 56.2
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.2e-142 510.8 495 55.6
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 1.3e-141 507.3 459 58.4
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.9e-140 503.4 494 53.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 5.5e-140 501.9 494 54.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.5e-140 501.9 494 53.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.2e-139 500.7 482 56.6
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 3.6e-139 499.2 514 52.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 4.7e-139 498.8 457 58.4
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.2e-137 494.2 447 59.7
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.4e-137 492.7 496 55.2
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.7e-134 483.0 496 50.8
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 6.6e-133 478.4 497 54.5
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 9.5e-132 474.6 453 57.8
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 6.2e-131 471.9 403 61.5
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.7e-128 463.8 403 61.3
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.8e-126 454.9 509 47.3
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.0e-125 454.5 492 47.8
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.5e-124 449.9 492 49.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-122 443.0 407 57.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.6e-118 430.6 459 52.3
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.9e-116 423.7 488 50.4
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.6e-115 420.6 491 48.1
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 4.1e-111 406.0 476 49.2
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.5e-108 396.7 501 46.3
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.6e-108 394.8 392 51.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.3e-100 369.4 490 47.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.1e-99 365.2 450 46.9
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 5.8e-97 359.0 340 55.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 7.1e-95 352.1 327 58.4
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-91 340.5 484 44.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.9e-88 329.3 325 56.6
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 3.4e-81 306.6 530 37.4
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 7.6e-73 278.9 552 32.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.0e-60 237.7 438 35.2
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.3e-56 224.9 530 33.6
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.4e-45 188.3 161 58.4
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.7e-33 147.5 143 56.6
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.4e-28 130.6 105 61.9
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 9.8e-28 129.0 485 27.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.3e-24 117.9 83 68.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.5e-23 114.4 95 62.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 9.5e-23 112.5 271 31.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 6.1e-22 109.8 95 60.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.8e-21 108.2 226 35.8
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.3e-16 92.0 119 42.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-16 91.7 95 51.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-15 88.6 68 70.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-14 84.7 375 25.1
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.0e-13 82.4 83 54.2
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.7e-11 73.9 71 47.9
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.5e-09 67.4 45 60.0
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.9e-07 61.6 69 42.0
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 7.3e-07 59.7 54 46.3


User provided reference genes

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