Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-300 1032.7 527 100.0
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.1e-298 1027.3 527 99.6
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-237 826.6 532 83.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.9e-231 805.8 529 82.4
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.0e-229 797.0 529 81.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 3.0e-200 702.2 532 71.6
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-195 686.0 524 71.2
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-192 676.4 554 67.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-191 671.4 517 70.4
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 8.2e-190 667.5 531 68.7
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.4e-186 654.1 509 70.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.1e-169 599.7 443 72.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 3.7e-166 589.0 533 60.6
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 4.4e-151 538.9 534 56.2
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 4.9e-150 535.4 535 55.5
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.2e-149 532.7 532 55.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 7.8e-148 528.1 530 54.5
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.0e-147 527.7 532 56.0
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 6.6e-147 525.0 532 55.8
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 7.3e-146 521.5 539 55.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.3e-146 521.5 532 55.8
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.1e-144 516.2 541 54.9
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.0e-144 515.8 532 54.5
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.2e-143 514.2 538 54.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 3.4e-143 512.7 540 54.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.2e-142 510.0 509 55.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.6e-140 503.8 534 53.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.8e-140 501.5 532 52.8
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.3e-139 500.7 533 54.2
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-138 497.7 533 53.5
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.5e-138 497.3 511 54.2
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.6e-138 495.4 540 53.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 9.5e-138 494.6 533 54.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.1e-136 491.1 542 53.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.2e-136 488.8 540 52.0
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.3e-134 484.2 518 52.9
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.7e-134 483.8 533 52.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-134 483.8 554 51.6
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.7e-134 483.8 540 51.7
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.9e-133 480.3 535 53.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 4.1e-133 479.2 547 51.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.5e-132 476.1 534 51.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 8.6e-131 471.5 535 48.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 8.6e-131 471.5 537 51.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.3e-130 469.2 534 52.1
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.6e-130 468.0 510 52.7
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-128 464.5 438 56.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.8e-128 461.8 533 50.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.5e-127 460.7 532 49.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 9.9e-127 458.0 538 50.0
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.9e-125 453.8 538 50.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.4e-125 452.2 536 49.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.4e-125 452.2 546 49.6
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.6e-124 449.1 532 47.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.1e-123 445.7 532 48.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 8.7e-123 444.9 537 48.4
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.5e-122 444.1 532 47.0
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.3e-122 441.8 546 48.9
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.3e-121 441.0 599 45.2
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.1e-121 440.3 537 47.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.2e-121 438.7 538 48.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 8.1e-121 438.3 546 48.7
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.4e-120 436.8 539 47.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.9e-120 435.3 535 46.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 6.9e-120 435.3 533 46.7
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.9e-120 435.3 529 47.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 6.9e-120 435.3 509 50.7
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.5e-119 434.1 537 46.7
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.0e-119 433.7 529 47.8
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.6e-119 433.3 534 47.8
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.9e-119 431.4 540 48.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.6e-116 422.5 541 46.4
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 4.6e-116 422.5 547 47.5
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.0e-116 422.2 532 46.2
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 7.9e-116 421.8 478 52.5
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 7.9e-116 421.8 547 47.5
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.7e-115 420.6 505 49.1
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.5e-114 417.5 553 47.0
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.5e-114 417.5 541 47.1
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 1.9e-114 417.2 557 45.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 3.3e-114 416.4 514 47.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 4.3e-114 416.0 545 46.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.3e-114 416.0 534 47.4
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.8e-112 410.6 532 46.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.0e-112 409.5 542 46.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-112 408.7 538 44.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-111 407.9 542 45.6
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.0e-111 407.1 540 45.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-111 407.1 541 46.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.0e-111 407.1 541 46.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.6e-111 406.8 534 43.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 9.9e-111 404.8 536 44.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.4e-109 400.2 529 45.0
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.2e-109 399.4 540 45.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 5.4e-109 399.1 445 49.9
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.2e-108 397.9 534 44.4
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.5e-108 396.4 497 48.5
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.6e-108 396.0 533 46.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.8e-107 394.0 453 51.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 3.3e-106 389.8 532 44.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.4e-106 388.7 408 53.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 9.6e-106 388.3 537 43.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.1e-105 387.1 565 42.7
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.1e-105 387.1 592 42.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.7e-105 386.3 530 43.2
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 6.2e-105 385.6 530 43.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.1e-104 384.8 535 43.2
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.3e-104 382.5 506 46.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 9.0e-104 381.7 538 43.5
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-103 380.2 533 43.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.5e-103 379.4 524 42.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.5e-101 373.6 424 48.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.2e-101 373.2 381 54.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-99 367.5 535 43.2
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.1e-99 365.9 536 43.3
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 9.6e-98 361.7 532 42.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 3.7e-97 359.8 537 42.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.7e-97 359.8 510 42.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 6.2e-97 359.0 532 42.5
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-96 358.2 519 41.8
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-96 358.2 529 42.2
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.8e-96 357.5 539 42.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.8e-95 352.4 502 45.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.2e-92 344.7 519 40.7
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.9e-91 339.7 470 44.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.1e-90 338.2 534 41.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.5e-87 326.2 534 40.3
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 9.4e-85 318.5 530 40.4
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 6.1e-84 315.8 544 39.9
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 7.9e-84 315.5 413 48.2
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.0e-83 315.1 532 38.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.9e-77 294.3 510 42.0
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.1e-76 290.8 283 50.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-75 287.0 535 38.9
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.2e-73 280.8 216 65.7
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 7.0e-72 275.8 216 63.9
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 7.7e-71 272.3 303 47.9
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 8.5e-70 268.9 382 41.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.2e-69 266.5 337 44.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 5.2e-67 259.6 452 36.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-63 247.7 431 39.2
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.9e-62 243.8 494 35.4
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.9e-62 243.8 455 36.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.9e-62 243.8 222 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.1e-61 241.9 298 45.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.4e-58 229.9 388 39.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-53 215.3 185 58.9
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.5e-45 188.3 135 63.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-45 186.8 113 78.8
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.0e-42 177.9 363 36.1
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 5.9e-39 166.4 202 50.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 5.0e-38 163.3 95 81.1
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 1.6e-36 158.3 251 38.2
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 3.0e-30 137.5 251 33.1
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 3.1e-27 127.5 316 33.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.0e-27 127.1 190 35.8
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 3.7e-25 120.6 61 95.1
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.2e-24 117.5 228 37.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.3e-21 107.5 76 63.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.1e-20 102.8 72 63.9
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 3.1e-19 100.9 93 63.4
FvH4_5g23491 Fragaria vesca HOM05D039556 ORTHO05D045650 1.0e-14 85.9 52 78.8
FAN03G1009 Fragaria x ananassa HOM05D039556 ORTHO05D045650 2.5e-13 81.3 92 53.3
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.8e-12 77.8 56 64.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 8.1e-12 76.3 113 44.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.9e-10 69.3 121 35.5
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.9e-08 65.1 45 68.9
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 7.1e-08 63.2 42 61.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 6.0e-07 60.1 74 43.2


User provided reference genes

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