Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.4e-134 481.1 261 100.0
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.6e-123 444.5 245 99.2
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-113 413.3 244 87.7
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 6.9e-113 411.0 244 86.9
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.0e-113 410.6 244 86.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-100 370.2 199 93.5
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.1e-99 367.1 225 85.3
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-90 336.7 245 72.2
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 1.1e-89 334.0 225 77.3
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.1e-89 332.4 226 77.0
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.3e-83 312.0 233 71.2
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 4.3e-83 312.0 228 72.8
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 5.7e-83 311.6 233 72.1
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 5.7e-83 311.6 230 70.9
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 7.4e-83 311.2 204 77.5
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 7.4e-83 311.2 204 78.9
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 9.7e-83 310.8 204 78.9
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.3e-82 310.5 231 70.1
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.8e-82 309.3 227 71.8
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 1.4e-81 307.0 202 78.2
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.8e-81 306.6 203 78.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.1e-81 305.8 204 77.5
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.1e-81 305.8 204 76.0
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 4.1e-81 305.4 227 70.0
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 4.1e-81 305.4 203 76.8
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 5.3e-81 305.1 204 76.0
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 5.3e-81 305.1 204 75.5
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 6.9e-81 304.7 227 69.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 1.5e-80 303.5 240 67.5
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.0e-80 303.1 225 71.1
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 2.0e-80 303.1 229 70.3
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 2.6e-80 302.8 204 76.0
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.6e-80 302.8 204 76.5
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 4.5e-80 302.0 203 74.4
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 5.9e-80 301.6 203 75.4
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 5.9e-80 301.6 255 65.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.3e-79 300.4 203 75.4
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 1.3e-79 300.4 204 77.5
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.7e-79 300.1 203 76.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.2e-79 299.7 203 75.4
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 2.9e-79 299.3 224 71.4
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 5.0e-79 298.5 201 74.6
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.1e-78 297.4 204 76.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-78 297.4 204 75.0
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 1.4e-78 297.0 246 63.0
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 1.4e-78 297.0 203 74.4
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.4e-78 297.0 223 71.3
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.9e-78 296.6 203 73.4
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.9e-78 296.6 229 69.9
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.9e-78 296.6 232 68.1
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 3.2e-78 295.8 169 92.3
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 3.2e-78 295.8 224 70.5
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.2e-78 295.8 227 70.0
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 7.2e-78 294.7 239 64.9
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 9.4e-78 294.3 231 67.5
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-77 293.9 160 92.5
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.6e-77 293.5 204 75.0
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 2.7e-77 292.7 204 75.5
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.6e-77 292.4 203 73.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 3.6e-77 292.4 203 73.4
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 3.6e-77 292.4 204 74.0
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 3.6e-77 292.4 206 72.8
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-77 292.0 203 73.4
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.6e-77 292.0 204 74.0
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.6e-77 292.0 204 74.0
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 6.1e-77 291.6 204 72.5
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 7.9e-77 291.2 201 73.6
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 7.9e-77 291.2 204 73.5
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 1.8e-76 290.0 204 73.0
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.8e-76 290.0 204 74.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 2.3e-76 289.7 204 72.5
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.3e-76 289.7 231 66.7
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 2.3e-76 289.7 202 73.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 3.9e-76 288.9 227 68.7
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 3.9e-76 288.9 227 67.8
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.9e-76 288.9 202 73.3
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 5.1e-76 288.5 203 73.4
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 5.1e-76 288.5 191 80.6
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 6.7e-76 288.1 230 64.3
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 8.8e-76 287.7 205 73.7
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.1e-75 287.3 204 72.5
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-75 287.3 204 72.5
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 1.1e-75 287.3 230 67.8
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-75 287.0 206 71.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.0e-75 286.6 227 67.4
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.0e-75 286.6 236 64.8
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 3.3e-75 285.8 260 61.2
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 4.3e-75 285.4 235 65.5
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 7.4e-75 284.6 224 67.0
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 9.7e-75 284.3 204 72.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 9.7e-75 284.3 245 63.7
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.3e-74 283.9 204 72.1
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.7e-74 283.5 206 70.4
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 4.8e-74 282.0 233 63.9
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 8.2e-74 281.2 197 73.6
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.4e-73 280.4 231 65.4
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.1e-73 279.3 230 64.8
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 4.1e-73 278.9 223 66.4
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.0e-72 276.6 196 70.9
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 2.0e-72 276.6 184 77.7
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 5.9e-72 275.0 234 62.8
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 7.7e-72 274.6 190 74.2
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.0e-71 274.2 276 57.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 1.3e-71 273.9 234 62.8
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.3e-71 273.9 187 71.1
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.2e-71 273.1 190 74.7
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 3.8e-71 272.3 202 71.3
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.0e-71 271.9 201 69.7
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 8.5e-71 271.2 181 75.1
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 1.1e-70 270.8 204 69.1
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 7.2e-70 268.1 167 81.4
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 1.2e-69 267.3 202 67.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 1.2e-69 267.3 240 61.2
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 6.1e-69 265.0 184 70.7
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 8.8e-68 261.2 208 67.3
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.1e-67 260.8 178 73.6
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 4.8e-66 255.4 206 68.4
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 1.1e-65 254.2 228 62.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.8e-65 253.4 296 49.7
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 2.4e-65 253.1 229 62.4
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 4.1e-65 252.3 229 62.4
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 7.0e-65 251.5 171 76.0
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.8e-63 245.7 192 63.5
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.2e-62 242.7 158 74.1
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 7.2e-62 241.5 241 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 6.7e-60 235.0 210 59.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.0e-59 233.4 239 56.1
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 5.7e-59 231.9 201 62.7
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 4.1e-57 225.7 210 57.1
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 9.1e-57 224.6 202 60.4
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 1.6e-56 223.8 221 56.6
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 1.3e-55 220.7 173 59.5
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 2.2e-55 219.9 198 58.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 8.5e-55 218.0 133 82.0
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 3.4e-51 206.1 126 80.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.5e-51 204.9 123 87.8
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 8.3e-50 201.4 147 73.5
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.8e-49 200.3 117 82.1
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 2.4e-49 199.9 206 48.5
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 3.1e-49 199.5 142 70.4
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 5.9e-48 195.3 143 70.6
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.1e-45 186.8 120 73.3
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 3.6e-45 186.0 145 67.6
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.8e-44 183.7 104 81.7
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.0e-43 180.3 175 60.6
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.7e-43 178.7 180 51.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 2.3e-36 156.8 229 42.8
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 4.4e-35 152.5 186 45.2
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.4e-33 147.5 309 35.6
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 7.0e-33 145.2 146 56.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-31 141.0 80 88.8
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 6.2e-29 132.1 186 48.9
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 1.8e-28 130.6 164 49.4
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 4.6e-24 115.9 75 77.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 5.6e-22 109.0 153 47.7
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 8.1e-21 105.1 111 54.1
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.4e-20 104.4 61 80.3
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.2e-19 101.3 77 70.1
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.2e-19 101.3 59 81.4
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 1.5e-19 100.9 81 60.5
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 7.5e-19 98.6 67 71.6
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.7e-18 97.4 173 40.5
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.1e-17 94.7 99 55.6
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 4.1e-17 92.8 95 56.8
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 1.0e-15 88.2 214 35.0
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 5.6e-14 82.4 137 39.4
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.1e-12 78.2 72 54.2
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.1e-12 76.6 103 45.6
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 5.8e-11 72.4 42 81.0
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 1.6e-08 64.3 48 68.8
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.7e-08 63.5 45 71.1
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 6.0e-08 62.4 52 61.5


User provided reference genes

Program Settings