Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3643 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.9e-40 168.7 83 100.0
FAN12G3747 Fragaria x ananassa HOM05D003319 ORTHO05D003739 7.2e-40 166.8 83 98.8
RcHm_v2.0_Chr7g0235501 Rosa chinensis HOM05D003319 ORTHO05D003739 2.6e-29 131.7 81 85.2
FAN18G0012 Fragaria x ananassa HOM05D003319 ORTHO05D003739 5.7e-29 130.6 83 80.7
FAN04G1055 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.3e-28 129.4 83 80.7
FAN13G1335 Fragaria x ananassa HOM05D003319 ORTHO05D003739 1.3e-28 129.4 83 80.7
FvH4_5g34820 Fragaria vesca HOM05D003319 ORTHO05D003739 2.8e-28 128.3 83 79.5
FAN08G0387 Fragaria x ananassa HOM05D003319 ORTHO05D003739 2.8e-28 128.3 83 79.5
FvH4_4g17970 Fragaria vesca HOM05D003319 ORTHO05D003739 7.0e-27 123.6 63 96.8
Potri.002G106500 Populus trichocarpa HOM05D003319 ORTHO05D003739 1.0e-22 109.8 80 67.5
Sabra02G0083800 Salix brachista HOM05D003319 ORTHO05D003739 1.0e-22 109.8 80 67.5
CAN.G806.11 Capsicum annuum HOM05D003319 ORTHO05D003739 1.8e-22 109.0 81 65.4
TAR628G1108 Trochodendron aralioides HOM05D003319 ORTHO05D003739 1.8e-22 109.0 81 67.9
MD15G1386000 Malus domestica HOM05D003319 ORTHO05D003739 4.0e-22 107.8 81 67.9
Sc26g0002970 Simmondsia chinensis HOM05D003319 ORTHO05D003739 5.2e-22 107.5 81 65.4
MD08G1198900 Malus domestica HOM05D003319 ORTHO05D003739 1.1e-21 106.3 82 70.7
Gohir.D01G114100 Gossypium hirsutum HOM05D003319 ORTHO05D003739 3.3e-21 104.8 81 63.0
Gorai.002G139000 Gossypium raimondii HOM05D003319 ORTHO05D003739 3.3e-21 104.8 81 63.0
Gohir.A01G126500 Gossypium hirsutum HOM05D003319 ORTHO05D003739 4.4e-21 104.4 81 61.7
Thecc.08G071400 Theobroma cacao HOM05D003319 ORTHO05D003739 4.4e-21 104.4 81 60.5
Lj4A737G58 Lonicera japonica HOM05D003319 ORTHO05D003739 5.7e-21 104.0 80 63.8
Lsat_1_v5_gn_9_74001 Lactuca sativa HOM05D003319 ORTHO05D003739 7.5e-21 103.6 80 62.5
Duzib041G0541 Durio zibethinus HOM05D003319 ORTHO05D003739 9.7e-21 103.2 81 61.7
Nitab4.5_0000354g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.3e-20 102.8 82 63.4
Haze_22463 Corylus avellana HOM05D003319 ORTHO05D003739 1.7e-20 102.4 81 63.0
Nitab4.5_0001607g0150 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.7e-20 102.4 82 62.2
TAR376G1177 Trochodendron aralioides HOM05D003319 ORTHO05D003739 1.7e-20 102.4 81 63.0
Aa31LG1G5280 Aethionema arabicum HOM05D003319 ORTHO05D003739 2.2e-20 102.1 78 62.8
CAN.G475.23 Capsicum annuum HOM05D003319 ORTHO05D003739 2.2e-20 102.1 81 61.7
Cfa009865 Carpinus fangiana HOM05D003319 ORTHO05D003739 2.2e-20 102.1 79 64.6
Cfa013800 Carpinus fangiana HOM05D003319 ORTHO05D003739 2.2e-20 102.1 81 61.7
Duzib093G0230 Durio zibethinus HOM05D003319 ORTHO05D003739 2.2e-20 102.1 81 63.0
Cc10_g15920 Coffea canephora HOM05D003319 ORTHO05D003739 2.8e-20 101.7 80 61.2
Sabra05G0119500 Salix brachista HOM05D003319 ORTHO05D003739 3.7e-20 101.3 75 65.3
ATR0582G130 Amborella trichopoda HOM05D003319 ORTHO05D003739 4.8e-20 100.9 75 66.7
Cpa.g.sc21.26 Carica papaya HOM05D003319 ORTHO05D003739 4.8e-20 100.9 79 60.8
Ciclev10000622m.g Citrus clementina HOM05D003319 ORTHO05D003739 4.8e-20 100.9 78 65.4
CARHR053790 Cardamine hirsuta HOM05D003319 ORTHO05D003739 6.3e-20 100.5 78 65.4
HanXRQChr15g0484821 Helianthus annuus HOM05D003319 ORTHO05D003739 6.3e-20 100.5 78 62.8
Nn1g05581 Nelumbo nucifera HOM05D003319 ORTHO05D003739 6.3e-20 100.5 72 69.4
CSS0018207 Camellia sinensis var. sinensis HOM05D003319 ORTHO05D003739 1.1e-19 99.8 81 59.3
Manes.02G144600 Manihot esculenta HOM05D003319 ORTHO05D003739 1.1e-19 99.8 80 61.2
Manes.18G058300 Manihot esculenta HOM05D003319 ORTHO05D003739 1.1e-19 99.8 77 62.3
Atru.chr13.1006 Acer truncatum HOM05D003319 ORTHO05D003739 1.4e-19 99.4 79 64.6
Dinv42609 Davidia involucrata HOM05D003319 ORTHO05D003739 1.8e-19 99.0 76 63.2
Solyc04g076360.4 Solanum lycopersicum HOM05D003319 ORTHO05D003739 2.4e-19 98.6 80 60.0
Actinidia19629 Actinidia chinensis HOM05D003319 ORTHO05D003739 3.1e-19 98.2 82 62.2
Aqoxy5G01379 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 3.1e-19 98.2 78 64.1
vmacro04648 Vaccinium macrocarpon HOM05D003319 ORTHO05D003739 5.3e-19 97.4 81 58.0
Sopen00g008100 Solanum pennellii HOM05D003319 ORTHO05D003739 7.0e-19 97.1 80 58.8
CDE11G0791 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 9.1e-19 96.7 74 64.9
Sopen12g030000 Solanum pennellii HOM05D003319 ORTHO05D003739 9.1e-19 96.7 80 60.0
CiPaw.08G055800 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.2e-18 96.3 81 60.5
Rhsim07G0212100 Rhododendron simsii HOM05D003319 ORTHO05D003739 1.2e-18 96.3 81 58.0
Solyc12g087970.2 Solanum lycopersicum HOM05D003319 ORTHO05D003739 1.2e-18 96.3 80 60.0
THA.LOC104816794 Tarenaya hassleriana HOM05D003319 ORTHO05D003739 1.2e-18 96.3 76 64.5
CiPaw.07G165000 Carya illinoinensis HOM05D003319 ORTHO05D003739 1.6e-18 95.9 81 58.0
Eucgr.F02154 Eucalyptus grandis HOM05D003319 ORTHO05D003739 1.6e-18 95.9 81 55.6
Nitab4.5_0005913g0020 Nicotiana tabacum HOM05D003319 ORTHO05D003739 1.6e-18 95.9 80 61.2
BcaB04g20193 Brassica carinata HOM05D003319 ORTHO05D003739 2.0e-18 95.5 79 59.5
A06p06390 Brassica napus HOM05D003319 ORTHO05D003739 2.7e-18 95.1 74 63.5
BraA06t23850Z Brassica rapa HOM05D003319 ORTHO05D003739 2.7e-18 95.1 74 63.5
Sp2g05390 Schrenkiella parvula HOM05D003319 ORTHO05D003739 2.7e-18 95.1 79 60.8
QL09p017848 Quercus lobata HOM05D003319 ORTHO05D003739 3.5e-18 94.7 79 58.2
TWI56G0998 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 3.5e-18 94.7 76 61.8
GSVIVG01009184001 Vitis vinifera HOM05D003319 ORTHO05D003739 3.5e-18 94.7 74 66.2
TWI36G0459 Tripterygium wilfordii HOM05D003319 ORTHO05D003739 4.5e-18 94.4 76 63.2
AT1G58220 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 5.9e-18 94.0 76 59.2
PGR042G0823 Punica granatum HOM05D003319 ORTHO05D003739 5.9e-18 94.0 73 63.0
Carub.0002s0638 Capsella rubella HOM05D003319 ORTHO05D003739 7.7e-18 93.6 78 60.3
Hma1.2p1_0010F.1_g006630 Hydrangea macrophylla HOM05D003319 ORTHO05D003739 7.7e-18 93.6 81 58.0
Prupe.1G532700 Prunus persica HOM05D003319 ORTHO05D003739 7.7e-18 93.6 79 59.5
MSTRG.11807 Avicennia marina HOM05D003319 ORTHO05D003739 1.3e-17 92.8 80 56.2
C05p07790 Brassica napus HOM05D003319 ORTHO05D003739 1.7e-17 92.4 80 61.2
QL01p017023 Quercus lobata HOM05D003319 ORTHO05D003739 1.7e-17 92.4 76 59.2
A09p18510 Brassica napus HOM05D003319 ORTHO05D003739 2.2e-17 92.0 79 60.8
BolC5t29530H Brassica oleracea HOM05D003319 ORTHO05D003739 2.2e-17 92.0 80 61.2
BraA09t37477Z Brassica rapa HOM05D003319 ORTHO05D003739 2.2e-17 92.0 79 60.8
ECA232G2539 Erigeron canadensis HOM05D001083 ORTHO05D001637 2.2e-17 92.0 72 62.5
Sed0024254 Sechium edule HOM05D003319 ORTHO05D003739 2.2e-17 92.0 80 57.5
CARHR009680 Cardamine hirsuta HOM05D003319 ORTHO05D003739 2.9e-17 91.7 77 61.0
Lalb_Chr11g0064951 Lupinus albus HOM05D003319 ORTHO05D003739 2.9e-17 91.7 76 59.2
Lalb_Chr23g0270031 Lupinus albus HOM05D003319 ORTHO05D003739 2.9e-17 91.7 77 59.7
Thhalv10024079m.g Eutrema salsugineum HOM05D003319 ORTHO05D003739 3.8e-17 91.3 79 59.5
PGR031G0455 Punica granatum HOM05D003319 ORTHO05D003739 3.8e-17 91.3 73 64.4
BcaC04g22121 Brassica carinata HOM05D003319 ORTHO05D003739 5.0e-17 90.9 76 60.5
C09p23120 Brassica napus HOM05D003319 ORTHO05D003739 5.0e-17 90.9 76 60.5
BolC9t55230H Brassica oleracea HOM05D003319 ORTHO05D003739 5.0e-17 90.9 76 60.5
PSO210G3859 Papaver somniferum HOM05D003319 ORTHO05D003739 5.0e-17 90.9 76 59.2
Aa31LG2G10920 Aethionema arabicum HOM05D003319 ORTHO05D003739 6.5e-17 90.5 74 59.5
Aqoxy5G01378 Aquilegia oxysepala HOM05D003319 ORTHO05D003739 8.5e-17 90.1 75 61.3
ClCG08G011640 Citrullus lanatus HOM05D003319 ORTHO05D003739 8.5e-17 90.1 76 59.2
Migut.A00432 Erythranthe guttata HOM05D003319 ORTHO05D003739 8.5e-17 90.1 76 60.5
Lalb_Chr08g0242551 Lupinus albus HOM05D003319 ORTHO05D003739 8.5e-17 90.1 71 62.0
MELO3C011083.2 Cucumis melo HOM05D003319 ORTHO05D003739 1.1e-16 89.7 76 59.2
PSO170G3999 Papaver somniferum HOM05D003319 ORTHO05D003739 1.1e-16 89.7 76 57.9
EL10Ac1g00993 Beta vulgaris HOM05D003319 ORTHO05D003739 1.5e-16 89.4 74 62.2
CANSAT35G1730 Cannabis sativa HOM05D003319 ORTHO05D003739 1.5e-16 89.4 77 58.4
Glyma.04G095300 Glycine max HOM05D003319 ORTHO05D003739 1.5e-16 89.4 74 62.2
Lj1g0027025 Lotus japonicus HOM05D003319 ORTHO05D003739 1.5e-16 89.4 68 61.8
Sp1g08300 Schrenkiella parvula HOM05D003319 ORTHO05D003739 1.5e-16 89.4 78 61.5
Ah.07g202760 Amaranthus hybridus HOM05D003319 ORTHO05D003739 2.5e-16 88.6 75 62.7
CiPaw.14G112200 Carya illinoinensis HOM05D003319 ORTHO05D003739 2.5e-16 88.6 80 57.5
AUR62019092 Chenopodium quinoa HOM05D003319 ORTHO05D003739 2.5e-16 88.6 72 65.3
AUR62023790 Chenopodium quinoa HOM05D003319 ORTHO05D003739 2.5e-16 88.6 77 59.7
BcaC09g49499 Brassica carinata HOM05D003319 ORTHO05D003739 3.2e-16 88.2 75 57.3
A01p28300 Brassica napus HOM05D003319 ORTHO05D003739 3.2e-16 88.2 76 56.6
C01p35850 Brassica napus HOM05D003319 ORTHO05D003739 3.2e-16 88.2 75 57.3
BolC1t03546H Brassica oleracea HOM05D003319 ORTHO05D003739 3.2e-16 88.2 75 57.3
BraA01t02959Z Brassica rapa HOM05D003319 ORTHO05D003739 3.2e-16 88.2 76 56.6
Oeu018565.2 Olea europaea HOM05D003319 ORTHO05D003739 3.2e-16 88.2 80 57.5
SGA_v2.0_scaffold193G40665 Striga asiatica HOM05D003319 ORTHO05D003739 3.2e-16 88.2 77 57.1
EL10Ac3g06093 Beta vulgaris HOM05D003319 ORTHO05D003739 5.5e-16 87.4 75 61.3
AUR62002401 Chenopodium quinoa HOM05D003319 ORTHO05D003739 5.5e-16 87.4 72 63.9
TPR.G6339 Trifolium pratense HOM05D003319 ORTHO05D003739 5.5e-16 87.4 81 56.8
AL1G20260 Arabidopsis lyrata HOM05D003319 ORTHO05D003739 7.2e-16 87.0 78 59.0
DCAR_012853 Daucus carota HOM05D003319 ORTHO05D003739 7.2e-16 87.0 74 59.5
DCAR_019315 Daucus carota HOM05D003319 ORTHO05D003739 7.2e-16 87.0 77 53.2
Sed0025417 Sechium edule HOM05D003319 ORTHO05D003739 7.2e-16 87.0 75 60.0
CsaV3_2G030210 Cucumis sativus L. HOM05D003319 ORTHO05D003739 9.4e-16 86.7 76 57.9
ClCG11G014590 Citrullus lanatus HOM05D003319 ORTHO05D003739 1.2e-15 86.3 81 53.1
ECA246G1786 Erigeron canadensis HOM05D003319 ORTHO05D003739 1.2e-15 86.3 76 59.2
Phvul.009G036300 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 1.2e-15 86.3 76 55.3
Carub.0001s0905 Capsella rubella HOM05D003319 ORTHO05D003739 1.6e-15 85.9 79 57.0
Ca_23436_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 1.6e-15 85.9 77 54.5
AT1G09710 Arabidopsis thaliana HOM05D003319 ORTHO05D003739 2.7e-15 85.1 76 56.6
VMungo1309G1101 Vigna mungo HOM05D003319 ORTHO05D003739 3.6e-15 84.7 76 53.9
Ca_29526_v3 Cicer arietinum L. HOM05D003319 ORTHO05D003739 4.7e-15 84.3 77 53.2
Migut.F01437 Erythranthe guttata HOM05D003319 ORTHO05D003739 4.7e-15 84.3 80 52.5
CsaV3_3G048000 Cucumis sativus L. HOM05D003319 ORTHO05D003739 8.0e-15 83.6 81 53.1
arahy.Tifrunner.gnm1.ann1.53Z6YZ Arachis hypogaea HOM05D003319 ORTHO05D003739 1.0e-14 83.2 76 53.9
arahy.Tifrunner.gnm1.ann1.ET429J Arachis hypogaea HOM05D003319 ORTHO05D003739 1.0e-14 83.2 76 53.9
Glyma.02G214600 Glycine max HOM05D003319 ORTHO05D003739 1.4e-14 82.8 68 61.8
arahy.Tifrunner.gnm1.ann1.S3SE83 Arachis hypogaea HOM05D003319 ORTHO05D003739 1.8e-14 82.4 70 57.1
Medtr3g100180 Medicago truncatula HOM05D003319 ORTHO05D003739 3.0e-14 81.6 76 48.7
arahy.Tifrunner.gnm1.ann1.J3DRUP Arachis hypogaea HOM05D003319 ORTHO05D003739 4.0e-14 81.3 70 57.1
MBI16_g19592_MAGBIO Magnolia biondii HOM05D003319 ORTHO05D003739 5.2e-14 80.9 59 66.1
MELO3C003521.2 Cucumis melo HOM05D003319 ORTHO05D003739 6.8e-14 80.5 79 53.2
PSO478G0631 Papaver somniferum HOM05D003319 ORTHO05D003739 6.8e-14 80.5 79 55.7
Psat5g049040 Pisum sativum HOM05D003319 ORTHO05D003739 6.8e-14 80.5 74 51.4
Lsat_1_v5_gn_6_104940 Lactuca sativa HOM05D003319 ORTHO05D003739 8.8e-14 80.1 77 58.4
Lj4A717T32 Lonicera japonica HOM05D003319 ORTHO05D003739 8.8e-14 80.1 57 68.4
HPP92_016140 Vanilla planifolia HOM05D003319 ORTHO05D003739 2.6e-13 78.6 68 54.4
Haze_23237 Corylus avellana HOM05D003319 ORTHO05D003739 3.4e-13 78.2 57 64.9
PSO782G3353 Papaver somniferum HOM05D003319 ORTHO05D003739 3.4e-13 78.2 77 51.9
Phvul.008G182100 Phaseolus vulgaris HOM05D003319 ORTHO05D003739 3.4e-13 78.2 72 58.3
SalBow4G2315 Salvia bowleyana HOM05D003319 ORTHO05D003739 3.4e-13 78.2 81 48.1
arahy.Tifrunner.gnm1.ann1.TQJ3R9 Arachis hypogaea HOM05D003319 ORTHO05D003739 4.4e-13 77.8 76 51.3
VMungo0647G1715 Vigna mungo HOM05D003319 ORTHO05D003739 7.5e-13 77.0 73 56.2
Zm00001eb181960 Zea mays HOM05D003319 ORTHO05D003739 9.8e-13 76.6 67 56.7
unitig_32.g10947 Utricularia gibba HOM05D003319 ORTHO05D003739 1.3e-12 76.3 72 55.6
Medtr8g024690 Medicago truncatula HOM05D003319 ORTHO05D003739 2.2e-12 75.5 78 50.0
PSO478G3694 Papaver somniferum HOM05D003319 ORTHO05D003739 2.2e-12 75.5 79 55.7
arahy.Tifrunner.gnm1.ann1.UL2XNL Arachis hypogaea HOM05D003319 ORTHO05D003739 2.8e-12 75.1 61 59.0
COL.COLO4_35252 Corchorus olitorius HOM05D001049 ORTHO05D001986 2.8e-12 75.1 57 64.9
PSO478G2921 Papaver somniferum HOM05D003319 ORTHO05D003739 2.8e-12 75.1 74 51.4
Peaxi162Scf00454g00323 Petunia axillaris HOM05D003319 ORTHO05D003739 2.8e-12 75.1 54 70.4
LjContig00408g0021434 Lotus japonicus HOM05D003319 ORTHO05D003739 4.8e-12 74.3 66 57.6
Hund04947 Selenicereus undatus HOM05D003319 ORTHO05D003739 4.8e-12 74.3 79 53.2
HanXRQChr05g0163341 Helianthus annuus HOM05D003319 ORTHO05D003739 8.3e-12 73.6 62 59.7
Zm00001eb243450 Zea mays HOM05D003319 ORTHO05D003739 8.3e-12 73.6 75 52.0
PSO478G0048 Papaver somniferum HOM05D003319 ORTHO05D003739 1.1e-11 73.2 78 53.8
PSO478G0452 Papaver somniferum HOM05D003319 ORTHO05D003739 1.1e-11 73.2 60 63.3
CAN.G193.10 Capsicum annuum HOM05D003319 ORTHO05D003739 1.8e-11 72.4 54 64.8
Psat2g065280 Pisum sativum HOM05D003319 ORTHO05D003739 3.1e-11 71.6 78 50.0
Mapoly0014s0193 Marchantia polymorpha HOM05D003319 ORTHO05D003739 4.1e-11 71.2 72 45.8
Nitab4.5_0000131g0210 Nicotiana tabacum HOM05D003319 ORTHO05D003739 9.1e-11 70.1 53 66.0
Peaxi162Scf00160g01038 Petunia axillaris HOM05D003319 ORTHO05D003739 9.1e-11 70.1 54 66.7
PSO782G3079 Papaver somniferum HOM05D003319 ORTHO05D003739 2.0e-10 68.9 78 50.0
SHI20381 Sapria himalayana HOM05D003319 ORTHO05D003739 4.5e-10 67.8 88 39.8
PGSC0003DMG400009342 Solanum tuberosum HOM05D003319 ORTHO05D003739 5.9e-10 67.4 52 63.5
Os02g0551400 Oryza sativa ssp. japonica HOM05D003319 ORTHO05D003739 1.0e-09 66.6 62 53.2
CBR_g9137 Chara braunii HOM05D000023 ORTHO05D000002 5.0e-09 64.3 69 47.8
Sc15g0002710 Simmondsia chinensis HOM05D003319 ORTHO05D003739 2.5e-08 62.0 49 63.3
Dinv44863 Davidia involucrata HOM05D001049 ORTHO05D001986 4.2e-08 61.2 38 65.8
CDE05G3064 Ceratophyllum demersum HOM05D003319 ORTHO05D003739 7.2e-08 60.5 50 56.0


User provided reference genes

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