Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 2.9e-73 278.5 141 100.0
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 3.8e-57 224.9 132 89.4
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.8e-57 224.9 132 89.4
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 3.2e-56 221.9 132 87.9
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 4.2e-56 221.5 132 87.9
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 2.1e-47 192.6 132 75.8
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 3.5e-47 191.8 127 76.4
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 6.7e-46 187.6 132 75.0
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.1e-45 186.8 132 74.2
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.5e-45 186.4 133 74.4
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 4.3e-45 184.9 126 77.0
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 5.6e-45 184.5 132 71.2
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 9.6e-45 183.7 132 71.2
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 9.6e-45 183.7 132 69.7
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.6e-44 183.0 132 74.2
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 1.6e-44 183.0 126 75.4
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 1.6e-44 183.0 123 76.4
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 2.1e-44 182.6 132 71.2
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 2.8e-44 182.2 132 70.5
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 3.7e-44 181.8 123 76.4
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 3.7e-44 181.8 132 71.2
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 3.7e-44 181.8 132 70.5
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 4.8e-44 181.4 132 68.9
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 8.1e-44 180.6 126 74.6
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.4e-43 179.9 132 69.7
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 1.8e-43 179.5 132 70.5
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.4e-43 179.1 123 76.4
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 4.0e-43 178.3 126 73.8
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 9.0e-43 177.2 132 71.2
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 1.2e-42 176.8 105 81.9
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 1.5e-42 176.4 132 70.5
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 2.6e-42 175.6 123 74.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 4.5e-42 174.9 123 74.0
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 4.5e-42 174.9 128 69.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 4.5e-42 174.9 107 78.5
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 7.6e-42 174.1 132 67.4
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 1.0e-41 173.7 109 78.9
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.0e-41 173.7 124 71.0
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 1.3e-41 173.3 123 73.2
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 1.7e-41 172.9 126 69.0
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 2.2e-41 172.6 121 72.7
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 2.2e-41 172.6 126 69.0
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 2.2e-41 172.6 126 69.0
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 2.2e-41 172.6 124 71.8
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 3.8e-41 171.8 123 72.4
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 3.8e-41 171.8 124 68.5
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 3.8e-41 171.8 132 65.2
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 4.9e-41 171.4 132 66.7
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 8.4e-41 170.6 102 79.4
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 8.4e-41 170.6 123 71.5
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 1.1e-40 170.2 102 80.4
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 1.4e-40 169.9 124 70.2
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.4e-40 169.9 102 83.3
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.9e-40 169.5 131 66.4
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 1.9e-40 169.5 130 65.4
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 4.2e-40 168.3 102 78.4
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 4.2e-40 168.3 99 83.8
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 7.1e-40 167.5 121 70.2
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 9.3e-40 167.2 132 70.5
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 1.2e-39 166.8 123 68.3
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 2.1e-39 166.0 139 64.0
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.6e-39 164.9 120 70.8
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 4.6e-39 164.9 120 70.8
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.8e-38 162.9 123 69.9
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 2.3e-38 162.5 123 67.5
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 6.7e-38 161.0 123 67.5
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 6.7e-38 161.0 137 62.0
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 6.7e-38 161.0 131 65.6
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 8.7e-38 160.6 121 66.9
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 8.7e-38 160.6 103 75.7
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 1.9e-37 159.5 123 69.1
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 3.3e-37 158.7 122 67.2
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 3.3e-37 158.7 132 64.4
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 7.4e-37 157.5 121 68.6
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 9.6e-37 157.1 123 65.0
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 4.8e-36 154.8 111 70.3
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 6.3e-36 154.5 101 74.3
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 1.4e-35 153.3 111 72.1
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 5.3e-35 151.4 140 60.0
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 6.9e-35 151.0 109 72.5
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 6.9e-35 151.0 132 60.6
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 6.5e-33 144.4 110 66.4
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 2.7e-31 139.0 115 60.9
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 4.6e-31 138.3 115 60.9
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 6.1e-31 137.9 105 63.8
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 1.3e-30 136.7 125 59.2
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.3e-30 136.7 125 59.2
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.3e-30 136.7 91 69.2
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 1.3e-30 136.7 125 57.6
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.8e-30 136.3 123 57.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.0e-30 135.6 125 58.4
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 5.1e-30 134.8 123 57.7
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 8.7e-30 134.0 100 66.0
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 1.9e-29 132.9 123 58.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 3.3e-29 132.1 125 57.6
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.3e-29 132.1 125 57.6
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 3.3e-29 132.1 91 74.7
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 4.3e-29 131.7 127 53.5
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 1.3e-28 130.2 128 58.6
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.3e-28 130.2 123 56.9
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 1.6e-28 129.8 77 83.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.1e-27 127.1 88 65.9
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 5.3e-27 124.8 91 68.1
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 6.9e-27 124.4 101 57.4
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 6.9e-27 124.4 76 77.6
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 2.0e-26 122.9 103 59.2
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 7.7e-26 120.9 120 50.8
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 5.0e-25 118.2 89 66.3
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 1.1e-24 117.1 71 77.5
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 2.5e-24 115.9 71 77.5
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 7.9e-23 110.9 65 80.0
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 2.3e-22 109.4 72 69.4
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 3.3e-21 105.5 81 66.7
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 3.4e-18 95.5 106 53.8
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.6e-15 86.7 93 49.5
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 4.5e-10 68.6 56 67.9
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 1.7e-09 66.6 56 66.1
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 3.8e-09 65.5 42 73.8
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 2.5e-08 62.8 84 35.7
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 4.2e-08 62.0 68 50.0
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.2e-07 60.5 57 59.6


User provided reference genes

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