Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-185 652.1 313 100.0
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-171 606.7 281 99.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.7e-166 589.3 273 99.3
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 8.7e-139 497.3 280 84.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.0e-126 457.2 222 93.2
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 2.6e-114 416.0 285 68.8
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.1e-112 410.6 298 66.8
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.8e-110 402.1 287 67.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.9e-109 399.8 287 67.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.2e-108 397.1 294 65.0
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.6e-108 396.7 286 66.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.0e-107 392.5 291 65.3
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.9e-102 375.9 289 63.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.5e-102 374.4 296 62.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 3.2e-101 372.5 296 63.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.6e-100 370.2 286 63.3
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 3.6e-100 369.0 303 60.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 3.6e-100 369.0 296 60.8
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 4.7e-100 368.6 297 63.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 4.7e-100 368.6 304 59.2
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.0e-99 367.5 287 62.0
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.0e-99 367.5 290 61.7
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.0e-99 367.5 291 60.1
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.0e-99 367.5 295 61.0
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.8e-99 366.7 303 59.4
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.8e-99 366.7 292 62.7
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 3.0e-99 365.9 288 63.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 4.0e-99 365.5 295 62.7
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 6.8e-99 364.8 287 62.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 8.8e-99 364.4 292 60.6
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.2e-98 364.0 294 62.6
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.2e-98 364.0 302 59.6
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.5e-98 363.6 310 58.7
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.0e-98 363.2 294 60.9
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 3.4e-98 362.5 295 60.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.4e-98 362.5 303 59.7
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 4.4e-98 362.1 298 59.7
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 9.8e-98 360.9 308 57.1
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.3e-97 360.5 295 60.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.3e-97 360.5 294 59.9
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.7e-97 360.1 302 59.6
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.2e-97 359.8 295 59.7
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.2e-97 359.8 295 59.7
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.2e-97 359.8 303 58.7
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.8e-97 359.4 282 62.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 6.3e-97 358.2 291 60.5
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 8.3e-97 357.8 293 60.1
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 8.3e-97 357.8 293 59.0
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 8.3e-97 357.8 303 59.7
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 8.3e-97 357.8 308 56.5
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.1e-96 357.5 276 62.7
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 1.4e-96 357.1 295 58.3
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.1e-96 355.9 298 59.4
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 3.1e-96 355.9 294 58.8
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 4.1e-96 355.5 296 60.5
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 4.1e-96 355.5 292 58.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.2e-95 354.0 298 59.1
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.5e-95 352.4 308 57.8
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 4.5e-95 352.1 306 57.8
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 5.9e-95 351.7 296 57.8
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 7.7e-95 351.3 296 58.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.0e-94 350.9 301 57.8
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.3e-94 350.5 301 58.5
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.7e-94 350.1 299 60.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.7e-94 350.1 296 57.1
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.3e-94 349.7 307 58.3
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.9e-94 349.4 302 57.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 5.0e-94 348.6 302 59.6
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.0e-94 348.6 290 56.6
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 5.0e-94 348.6 299 57.9
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 6.6e-94 348.2 299 57.5
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.6e-94 348.2 297 59.6
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.6e-94 348.2 299 59.9
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 8.6e-94 347.8 291 60.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.1e-93 347.4 289 58.8
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.5e-93 347.1 293 59.7
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 5.5e-93 345.1 288 59.4
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 7.2e-93 344.7 307 57.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-92 344.0 227 69.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-92 344.0 288 58.3
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.1e-92 343.2 301 57.5
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.4e-91 340.5 305 55.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.8e-91 340.1 301 56.1
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 2.3e-91 339.7 289 59.5
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.2e-90 337.4 278 61.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.0e-90 336.7 302 57.0
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 2.6e-90 336.3 325 54.5
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 2.6e-90 336.3 302 57.0
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 2.6e-90 336.3 298 58.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 4.4e-90 335.5 292 58.2
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.4e-90 335.5 213 70.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 9.8e-90 334.3 285 58.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 2.8e-89 332.8 289 58.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 8.3e-89 331.3 225 66.7
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.8e-88 330.1 227 65.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 9.2e-88 327.8 294 58.2
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 4.5e-87 325.5 298 54.0
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.0e-86 324.3 285 57.5
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 8.6e-86 321.2 300 55.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 9.5e-85 317.8 226 63.7
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 4.4e-82 308.9 309 50.5
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.0e-80 301.6 201 70.1
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.2e-79 300.8 226 58.0
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.7e-79 299.7 212 60.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.3e-78 297.4 213 69.5
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.1e-77 294.3 198 67.2
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.5e-77 293.1 280 50.0
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 7.3e-77 291.6 289 54.3
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 1.6e-76 290.4 299 52.2
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.7e-73 280.4 295 51.9
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 6.0e-71 271.9 254 56.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.1e-67 259.6 183 62.8
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.3e-65 254.2 289 47.1
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.2e-56 223.0 224 48.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.7e-54 217.2 166 63.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 5.1e-54 215.7 222 48.2
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 3.0e-46 189.9 355 35.8
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 4.0e-43 179.5 230 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.9e-38 162.9 125 53.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 4.9e-33 146.0 109 58.7
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 5.5e-32 142.5 391 27.6
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 7.9e-31 138.7 151 53.0
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 6.2e-28 129.0 145 51.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.7e-13 79.3 180 30.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 5.5e-08 62.8 46 56.5
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.8e-06 57.8 99 41.4


User provided reference genes

Program Settings