Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1290.0 717 100.0
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 0.0e+00 1248.4 772 92.0
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1164.1 858 79.7
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1099.7 833 78.6
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 0.0e+00 1095.9 774 81.9
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.6e-273 944.9 779 65.9
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 2.4e-216 756.1 777 53.7
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.2e-212 743.8 807 51.4
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 5.7e-210 734.9 784 53.2
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.3e-209 733.8 757 55.6
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 5.0e-206 721.8 793 55.0
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 8.5e-206 721.1 772 54.1
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.2e-205 718.8 779 52.5
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.6e-204 715.7 786 51.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.4e-203 713.8 732 54.8
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.3e-203 713.0 781 51.3
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.2e-202 710.7 780 56.7
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-202 710.3 766 53.3
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-202 709.9 598 59.5
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.1e-200 704.1 778 50.6
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.0e-199 699.9 732 54.5
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 7.7e-199 698.0 598 58.9
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.8e-198 695.7 784 49.9
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 5.5e-197 691.8 596 59.6
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.7e-196 689.5 597 58.3
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 1.0e-195 687.6 780 50.0
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.8e-195 686.8 631 56.4
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.8e-195 686.8 629 56.3
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 5.2e-195 685.3 597 59.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.0e-194 683.3 736 55.3
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 2.6e-194 682.9 597 57.3
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.8e-193 678.7 631 55.5
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.4e-192 677.2 583 59.3
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 2.3e-190 669.8 577 59.3
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.9e-189 666.8 665 53.4
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 5.5e-189 665.2 578 58.1
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 5.5e-189 665.2 778 48.6
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 8.0e-188 661.4 578 57.6
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 5.2e-187 658.7 774 51.8
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 6.8e-187 658.3 663 53.8
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.0e-186 656.8 783 49.3
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.7e-185 653.7 598 56.7
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.2e-185 653.3 754 52.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 3.7e-185 652.5 578 58.7
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 6.3e-185 651.7 653 53.0
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 2.4e-184 649.8 383 82.8
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 9.2e-184 647.9 652 52.8
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.2e-183 647.5 768 50.3
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.2e-183 647.5 615 54.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 1.6e-183 647.1 596 57.6
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 2.3e-182 643.3 768 49.6
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.0e-182 642.1 546 60.1
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 6.6e-182 641.7 596 55.4
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 2.8e-180 636.3 764 49.1
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 1.4e-179 634.0 598 54.5
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 3.1e-179 632.9 575 56.5
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 2.6e-178 629.8 766 48.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.4e-178 629.4 766 49.2
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 5.8e-178 628.6 767 47.8
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 4.9e-177 625.5 653 51.0
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.4e-176 624.0 550 58.0
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.9e-176 623.6 607 53.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 5.4e-176 622.1 759 47.7
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 5.4e-176 622.1 602 60.0
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 3.5e-175 619.4 598 53.2
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.1e-173 614.4 783 47.0
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 2.5e-173 613.2 578 55.5
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.5e-173 613.2 567 54.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.8e-172 609.8 572 54.5
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 8.0e-172 608.2 749 45.7
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.1e-168 597.8 573 52.9
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 2.7e-167 593.2 778 49.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 7.3e-165 585.1 429 66.2
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.6e-164 582.8 587 52.0
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.4e-163 580.9 1064 37.7
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 6.8e-163 578.6 598 51.8
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 4.9e-161 572.4 594 51.0
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.4e-160 570.1 533 55.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.7e-159 566.6 523 55.4
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.5e-159 566.2 637 51.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-155 554.7 592 49.8
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 2.0e-154 550.4 552 53.3
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 3.5e-151 539.7 571 49.2
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.0e-150 538.1 592 48.8
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.3e-150 537.7 844 41.5
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.8e-147 527.3 385 66.5
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 9.0e-147 525.0 575 48.3
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.5e-143 513.1 582 47.3
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 4.0e-139 499.6 585 46.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.6e-138 495.4 596 46.6
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.1e-136 491.5 602 46.0
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.4e-136 491.1 583 43.4
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.9e-136 490.7 588 44.2
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.5e-133 480.3 634 44.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.6e-132 477.6 459 53.6
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 6.4e-129 465.7 623 43.2
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 8.2e-124 448.7 472 50.6
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.2e-120 436.4 523 45.1
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.5e-119 433.3 488 45.1
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 3.0e-118 430.3 349 62.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 2.2e-113 414.1 318 63.8
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.1e-110 402.9 293 64.2
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.3e-109 399.8 328 58.8
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.6e-101 374.0 552 43.7
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 6.7e-94 349.4 446 41.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.3e-93 347.1 537 38.7
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.4e-91 340.9 463 41.5
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.4e-86 325.1 360 48.1
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 1.8e-86 324.7 289 57.8
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.1e-83 315.5 466 38.8
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.7e-81 308.1 329 51.1
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.9e-81 307.4 463 38.7
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 2.2e-76 291.2 433 40.4
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 6.6e-73 279.6 445 45.4
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 4.2e-72 276.9 249 58.2
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-68 265.0 572 35.5
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.8e-67 261.5 529 35.0
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.1e-64 252.3 527 30.6
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.0e-62 243.8 215 58.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.4e-59 235.3 156 73.1
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.7e-58 231.1 155 71.0
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 8.6e-57 226.1 339 49.3
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 3.4e-53 214.2 273 48.0
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.8e-53 213.4 147 68.0
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 2.2e-52 211.5 196 57.7
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 2.9e-52 211.1 287 42.2
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 6.4e-52 209.9 146 69.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.3e-52 209.5 135 72.6
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 7.1e-51 206.5 280 41.4
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.3e-44 185.7 251 43.8
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.2e-38 163.7 164 52.4
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 7.1e-35 153.3 119 67.2
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-30 139.4 92 72.8
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.3e-30 137.1 84 77.4
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 5.8e-29 133.7 303 34.3
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.4e-27 129.0 82 70.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 7.9e-26 123.2 192 38.5
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.9e-25 120.9 92 63.0
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.5e-24 119.0 85 64.7
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.6e-23 115.5 109 56.9
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.6e-23 115.5 162 44.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 6.9e-22 110.2 105 58.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.2e-21 109.4 169 34.9
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.2e-21 109.4 271 31.4
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 7.6e-21 106.7 171 38.6
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.3e-20 105.9 70 72.9
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 4.2e-19 100.9 70 74.3
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.0e-17 96.3 86 54.7
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 1.3e-17 95.9 288 28.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 5.6e-16 90.5 207 31.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 6.2e-15 87.0 96 47.9
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 4.6e-10 70.9 106 41.5
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 8.2e-07 60.1 47 63.8
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.1e-06 59.7 97 38.1


User provided reference genes

Program Settings