Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 0.0e+00 2352.4 1175 100.0
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 0.0e+00 2294.2 1169 98.5
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 0.0e+00 2135.5 1168 92.8
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 0.0e+00 2071.6 1162 90.5
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 0.0e+00 1789.6 1146 80.0
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 0.0e+00 1414.8 1155 64.5
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 0.0e+00 1328.5 1139 62.5
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 5.9e-305 1051.2 1041 57.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 1.6e-297 1026.5 1167 49.8
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.8e-290 1003.0 1174 48.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 2.4e-290 1002.7 1174 48.4
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 5.5e-279 964.9 1169 46.6
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 4.9e-275 951.8 1167 46.8
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 7.3e-271 937.9 1176 46.9
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 3.6e-270 935.6 1178 46.5
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 6.8e-269 931.4 1172 46.5
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 6.4e-267 924.9 1173 46.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.2e-262 910.6 1170 46.7
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.5e-260 903.7 1169 45.4
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.6e-257 892.1 1164 45.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 3.9e-256 889.0 1174 44.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.1e-245 854.4 1167 43.1
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 5.8e-244 848.6 1178 43.1
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 2.2e-243 846.7 1162 43.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 8.4e-243 844.7 1199 42.5
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.2e-242 842.4 1200 42.1
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.3e-240 836.6 1165 43.5
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.8e-238 829.7 1111 45.5
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.4e-234 816.6 992 47.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 5.1e-232 808.9 1166 42.2
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 6.9e-229 798.5 1100 44.2
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 2.6e-228 796.6 1160 41.6
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 6.4e-227 792.0 1171 41.6
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 8.4e-227 791.6 1175 43.3
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.8e-224 783.9 1166 41.0
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.8e-222 775.8 1166 41.7
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 6.2e-222 775.4 1249 40.0
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 8.1e-222 775.0 1204 41.6
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.1e-218 764.6 1184 41.2
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.3e-215 752.7 1173 38.6
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.4e-213 746.9 1190 41.3
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.3e-211 741.1 1001 45.0
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 2.9e-211 740.0 1165 39.7
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.9e-210 737.3 1168 39.5
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 2.5e-210 736.9 1158 38.9
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 7.2e-210 735.3 1154 38.8
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.1e-209 733.8 1166 37.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 7.9e-209 731.9 940 45.9
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.3e-206 724.5 1168 39.0
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-204 717.6 1172 39.2
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 2.6e-204 716.8 1169 38.7
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.6e-204 716.8 1172 39.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 3.4e-204 716.5 1161 38.9
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 8.5e-203 711.8 1167 38.5
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 6.1e-201 705.7 1154 38.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.1e-199 701.4 1152 37.9
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 3.3e-199 699.9 1148 38.2
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.3e-198 698.0 1151 37.4
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 5.3e-197 692.6 1156 37.9
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 5.3e-197 692.6 1156 37.7
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 5.9e-196 689.1 1155 38.8
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 7.7e-196 688.7 1180 38.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.0e-195 688.3 1184 37.8
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.1e-194 684.9 1181 38.0
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 9.4e-194 681.8 1180 37.6
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 9.4e-194 681.8 1180 37.6
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 4.7e-193 679.5 1178 38.4
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.0e-192 678.3 1168 38.6
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.3e-192 677.2 1158 38.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 2.5e-186 657.1 920 44.2
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 9.4e-186 655.2 1164 37.2
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.1e-185 654.1 1149 37.9
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.7e-185 653.7 1152 36.5
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.7e-185 652.9 1169 35.8
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.0e-184 649.8 1220 36.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.3e-183 646.7 1156 36.1
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 7.5e-183 645.6 1167 36.0
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.2e-180 638.3 1170 35.7
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.9e-179 633.6 1179 36.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 1.0e-176 625.2 1188 35.9
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 5.2e-176 622.9 1161 36.1
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.3e-174 615.9 1164 36.0
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.4e-173 614.8 1153 36.2
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.0e-167 594.3 1165 35.6
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.6e-164 584.7 1158 35.8
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.9e-160 568.9 983 36.6
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 9.2e-157 558.9 1142 35.6
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 7.8e-156 555.8 1106 34.4
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.5e-154 550.8 884 40.2
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 7.0e-149 532.7 973 36.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 5.2e-144 516.5 1219 31.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.2e-143 515.4 653 44.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 3.9e-139 500.4 1262 29.7
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.7e-126 458.4 1240 27.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.2e-109 400.6 884 33.1
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 5.3e-104 383.6 883 33.0
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.3e-91 342.4 447 45.0
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.1e-88 330.9 815 32.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 9.4e-85 319.7 1285 24.4
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.0e-82 312.0 1291 26.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 8.5e-78 296.6 313 52.7
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.2e-77 294.7 338 46.4
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-76 292.0 427 40.0
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 7.9e-76 290.0 345 48.1
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.0e-75 288.1 339 47.8
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 2.2e-73 282.0 344 46.2
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 9.1e-72 276.6 323 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.1e-69 269.6 1161 25.4
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 7.2e-69 266.9 271 53.9
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 2.1e-60 238.8 312 43.6
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.5e-58 232.6 356 40.2
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.2e-57 228.8 358 40.5
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.5e-55 221.5 368 40.2
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.7e-54 219.2 244 47.1
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.6e-52 211.5 234 47.9
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 6.1e-52 210.7 397 33.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.3e-46 193.0 175 56.6
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 2.5e-45 188.7 305 36.7
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 4.3e-45 188.0 835 25.4
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 7.3e-45 187.2 203 49.3
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.7e-41 174.9 175 52.0
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 4.1e-40 171.4 175 50.9
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.9e-39 167.5 489 28.6
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.7e-38 166.0 167 53.9
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.6e-38 163.7 174 49.4
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.1e-35 155.2 306 34.0
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 6.8e-35 154.1 187 46.5
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.9e-32 146.0 129 58.9
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 6.0e-31 141.0 355 27.6
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.0e-30 140.2 241 34.0
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.6e-30 137.5 289 34.6
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 5.6e-29 134.4 215 36.7
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.7e-23 115.5 444 25.9
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.6e-20 106.3 101 54.5
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.2e-20 104.4 229 29.3
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 3.3e-13 82.0 131 42.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 9.6e-13 80.5 74 59.5
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-12 79.3 79 50.6
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 2.8e-12 79.0 78 51.3
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.8e-09 68.6 105 37.1
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.1e-08 67.0 99 37.4
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 5.1e-06 58.2 140 30.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 8.7e-06 57.4 86 37.2


User provided reference genes

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