Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.5e-81 306.2 163 100.0
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.8e-80 301.2 162 98.1
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.4e-79 298.9 163 98.2
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.9e-77 291.2 163 95.7
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 1.3e-64 250.0 162 84.0
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.2e-50 201.4 107 97.2
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 8.5e-37 157.5 168 57.1
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.2e-33 147.1 156 55.1
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.5e-30 135.2 160 51.2
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.3e-29 133.7 149 57.0
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 1.3e-29 133.7 161 55.3
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.3e-29 132.9 155 55.5
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.1e-28 130.6 156 48.1
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 1.5e-28 130.2 137 54.0
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 4.7e-27 125.2 149 47.0
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 4.7e-27 125.2 152 56.6
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 8.0e-27 124.4 157 49.7
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 5.2e-26 121.7 151 49.0
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 8.9e-26 120.9 145 49.7
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 8.9e-26 120.9 137 49.6
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.6e-25 119.4 147 46.3
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 4.4e-25 118.6 169 43.8
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.7e-24 116.7 139 51.8
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 2.8e-24 115.9 163 42.3
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 6.3e-24 114.8 168 42.9
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 8.3e-24 114.4 147 44.9
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.4e-23 113.6 153 44.4
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 2.4e-23 112.8 154 46.1
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 4.1e-23 112.1 142 47.9
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 5.4e-23 111.7 146 46.6
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 5.9e-22 108.2 152 42.1
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.0e-21 107.5 158 44.3
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.9e-21 105.9 144 44.4
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 5.0e-21 105.1 150 46.7
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.6e-21 104.4 152 45.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.1e-20 104.0 165 44.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 1.1e-20 104.0 163 43.6
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.1e-20 104.0 157 42.0
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.5e-20 103.6 158 43.0
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.5e-20 103.6 121 48.8
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.9e-20 103.2 158 42.4
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 3.3e-20 102.4 142 42.3
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 5.6e-20 101.7 164 43.9
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 7.3e-20 101.3 158 41.1
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 7.3e-20 101.3 159 44.0
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-19 100.5 170 43.5
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.6e-19 100.1 146 42.5
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.8e-19 99.4 143 42.7
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.6e-19 99.0 154 40.9
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.6e-19 99.0 171 39.8
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 4.7e-19 98.6 162 38.9
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 4.7e-19 98.6 151 44.4
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.0e-18 97.4 157 41.4
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.0e-18 97.4 143 37.8
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.0e-18 97.4 153 44.4
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.0e-18 97.4 148 40.5
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.8e-18 96.7 147 43.5
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.3e-18 96.3 135 42.2
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.3e-18 96.3 149 43.0
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 2.3e-18 96.3 174 39.7
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.0e-18 95.5 140 42.9
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.0e-18 95.5 140 42.9
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 4.0e-18 95.5 107 50.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.8e-18 94.7 153 41.2
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 6.8e-18 94.7 158 43.7
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.9e-18 94.4 156 42.9
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.5e-17 93.6 146 38.4
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 1.5e-17 93.6 148 43.9
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 2.0e-17 93.2 143 46.9
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.6e-17 92.8 134 45.5
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.8e-17 91.7 170 37.6
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 5.8e-17 91.7 171 38.0
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 5.8e-17 91.7 141 44.0
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.5e-17 91.3 156 42.3
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 9.8e-17 90.9 145 44.8
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.3e-16 90.5 147 42.2
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.3e-16 90.5 160 40.0
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-16 90.5 160 40.0
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.7e-16 90.1 143 40.6
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.7e-16 90.1 138 42.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.2e-16 89.7 153 39.9
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 2.9e-16 89.4 154 38.3
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 3.7e-16 89.0 142 40.8
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 3.7e-16 89.0 142 40.8
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.7e-16 89.0 146 42.5
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 4.9e-16 88.6 145 40.7
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 4.9e-16 88.6 156 41.0
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 8.3e-16 87.8 143 42.0
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 1.1e-15 87.4 139 39.6
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.1e-15 87.4 152 38.2
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.1e-15 87.4 144 44.4
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 3.2e-15 85.9 136 41.9
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 4.1e-15 85.5 142 41.5
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 7.0e-15 84.7 141 41.8
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 7.0e-15 84.7 137 46.7
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 7.0e-15 84.7 144 41.7
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 9.2e-15 84.3 151 41.1
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 9.2e-15 84.3 160 37.5
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 1.6e-14 83.6 145 40.0
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 1.6e-14 83.6 145 40.0
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.6e-14 83.6 180 36.1
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.0e-14 83.2 143 41.3
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.7e-14 82.8 159 38.4
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 2.7e-14 82.8 99 44.4
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 2.7e-14 82.8 140 40.0
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 4.6e-14 82.0 138 39.9
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 6.0e-14 81.6 142 43.0
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 7.8e-14 81.3 143 41.3
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.0e-13 80.9 147 38.8
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 1.3e-13 80.5 141 39.7
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 1.3e-13 80.5 141 39.7
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.7e-13 80.1 150 38.7
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 3.0e-13 79.3 145 40.0
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 5.0e-13 78.6 151 37.1
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.5e-12 77.0 113 40.7
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 1.9e-12 76.6 141 38.3
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 1.9e-12 76.6 141 38.3
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 7.3e-12 74.7 156 36.5
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 9.5e-12 74.3 142 40.1
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.2e-11 73.9 150 38.0
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 1.6e-11 73.6 140 38.6
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 1.6e-11 73.6 140 38.6
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 2.1e-11 73.2 100 45.0
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 2.8e-11 72.8 138 37.0
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 3.6e-11 72.4 140 37.9
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.7e-11 72.0 98 44.9
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 4.7e-11 72.0 129 38.0
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.1e-10 70.9 107 42.1
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.1e-10 70.9 165 35.2
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 5.2e-10 68.6 110 41.8
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 8.9e-10 67.8 117 38.5
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.0e-09 66.6 100 42.0
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 2.6e-09 66.2 87 47.1
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 1.7e-08 63.5 137 38.0
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 1.7e-08 63.5 148 33.8
Nn3g21745 Nelumbo nucifera HOM05D001624 ORTHO05D001530 3.7e-08 62.4 150 33.3
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 4.9e-08 62.0 153 34.0
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 4.9e-08 62.0 159 32.1
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.9e-08 62.0 138 38.4
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.4e-08 61.6 129 38.0
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.4e-08 61.6 179 33.0
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 8.3e-08 61.2 119 33.6
CiPaw.07G030500 Carya illinoinensis HOM05D001624 ORTHO05D001530 4.1e-07 58.9 146 30.1
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 5.4e-07 58.5 68 54.4
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 9.2e-07 57.8 162 30.9
Potri.005G012400 Populus trichocarpa HOM05D001624 ORTHO05D001530 1.2e-06 57.4 122 34.4
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.2e-06 57.4 182 29.7
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 1.6e-06 57.0 144 31.2
Sabra05G0020200 Salix brachista HOM05D001624 ORTHO05D001530 1.6e-06 57.0 121 32.2
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 3.5e-06 55.8 139 33.1
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.6e-06 55.5 95 36.8
TAR365G0349 Trochodendron aralioides HOM05D001624 ORTHO05D001530 6.0e-06 55.1 150 30.7
TAR633G2530 Trochodendron aralioides HOM05D001624 ORTHO05D001530 7.8e-06 54.7 152 32.2
HPP92_001231 Vanilla planifolia HOM05D001624 ORTHO05D001530 7.8e-06 54.7 139 30.2


User provided reference genes

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