Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3360 Fragaria x ananassa HOM05D006498 ORTHO05D006377 9.7e-161 570.5 373 100.0
FvH4_4g07150 Fragaria vesca HOM05D006498 ORTHO05D006377 1.1e-151 540.4 373 94.1
FAN17G1293 Fragaria x ananassa HOM05D006498 ORTHO05D006377 2.1e-147 526.2 376 88.0
FAN22G0654 Fragaria x ananassa HOM05D006498 ORTHO05D006377 2.0e-137 493.0 428 79.4
RcHm_v2.0_Chr4g0399301 Rosa chinensis HOM05D006498 ORTHO05D006377 4.7e-99 365.5 438 67.6
Prupe.1G074500 Prunus persica HOM05D006498 ORTHO05D006377 3.1e-74 283.1 433 52.0
MD13G1239600 Malus domestica HOM05D006498 ORTHO05D006377 1.1e-71 274.6 327 59.0
Haze_22031 Corylus avellana HOM05D006498 ORTHO05D006377 2.2e-64 250.4 408 50.7
VMungo1215G1417 Vigna mungo HOM05D006498 ORTHO05D006377 5.5e-63 245.7 394 53.0
CiPaw.07G197600 Carya illinoinensis HOM05D006498 ORTHO05D006377 4.6e-62 242.7 390 51.3
Ca_21256_v3 Cicer arietinum L. HOM05D006498 ORTHO05D006377 1.0e-61 241.5 398 52.0
TWI32G0168 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 9.6e-60 235.0 392 46.7
Manes.14G159400 Manihot esculenta HOM05D006498 ORTHO05D006377 2.8e-59 233.4 308 54.5
Duzib150G1211 Durio zibethinus HOM05D006498 ORTHO05D006377 1.8e-58 230.7 428 43.7
TWI34G1139 Tripterygium wilfordii HOM05D006498 ORTHO05D006377 6.9e-58 228.8 395 46.6
Eucgr.C00107 Eucalyptus grandis HOM05D006498 ORTHO05D006377 9.0e-58 228.4 302 57.6
Gohir.D13G212600 Gossypium hirsutum HOM05D006498 ORTHO05D006377 1.2e-57 228.0 426 46.2
Gorai.013G243000 Gossypium raimondii HOM05D006498 ORTHO05D006377 1.2e-57 228.0 426 46.2
Phvul.003G140900 Phaseolus vulgaris HOM05D006498 ORTHO05D006377 1.2e-57 228.0 394 53.6
Cfa013457 Carpinus fangiana HOM05D006498 ORTHO05D006377 1.5e-57 227.6 409 51.6
Gohir.A13G208200 Gossypium hirsutum HOM05D006498 ORTHO05D006377 2.0e-57 227.3 322 51.2
MELO3C017425.2 Cucumis melo HOM05D006498 ORTHO05D006377 1.0e-56 224.9 332 54.8
arahy.Tifrunner.gnm1.ann1.YNM2K2 Arachis hypogaea HOM05D006498 ORTHO05D006377 2.2e-56 223.8 313 54.0
Lj4g0022386 Lotus japonicus HOM05D006498 ORTHO05D006377 2.2e-56 223.8 384 53.1
arahy.Tifrunner.gnm1.ann1.XIUU7W Arachis hypogaea HOM05D006498 ORTHO05D006377 3.8e-56 223.0 311 54.3
CAN.G844.1 Capsicum annuum HOM05D006498 ORTHO05D006377 1.9e-55 220.7 433 43.6
Atru.chr7.955 Acer truncatum HOM05D006498 ORTHO05D006377 2.5e-55 220.3 428 43.2
Sed0023189 Sechium edule HOM05D006498 ORTHO05D006377 2.5e-55 220.3 341 54.0
CSS0012471 Camellia sinensis var. sinensis HOM05D006498 ORTHO05D006377 5.5e-55 219.2 348 49.4
ClCG06G013640 Citrullus lanatus HOM05D006498 ORTHO05D006377 5.5e-55 219.2 333 53.5
Ciclev10008415m.g Citrus clementina HOM05D006498 ORTHO05D006377 2.1e-54 217.2 436 48.6
Medtr4g127350 Medicago truncatula HOM05D006498 ORTHO05D006377 7.9e-54 215.3 399 51.9
Hma1.2p1_0491F.1_g164630 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 1.8e-53 214.2 306 49.7
Glyma.13G101000 Glycine max HOM05D006498 ORTHO05D006377 3.0e-53 213.4 305 53.1
Psat0s3389g0200 Pisum sativum HOM05D006498 ORTHO05D006377 1.5e-52 211.1 307 52.1
THA.LOC104820009 Tarenaya hassleriana HOM05D006498 ORTHO05D006377 4.3e-52 209.5 418 45.7
Thecc.09G186800 Theobroma cacao HOM05D006498 ORTHO05D006377 4.3e-52 209.5 338 47.9
AT2G19270 Arabidopsis thaliana HOM05D006498 ORTHO05D006377 7.4e-52 208.8 396 44.4
Cc01_g15950 Coffea canephora HOM05D006498 ORTHO05D006377 7.4e-52 208.8 430 50.2
Sabra06G0055700 Salix brachista HOM05D006498 ORTHO05D006377 7.4e-52 208.8 492 40.7
GSVIVG01029313001 Vitis vinifera HOM05D006498 ORTHO05D006377 7.4e-52 208.8 384 49.5
Dinv28799 Davidia involucrata HOM05D006498 ORTHO05D006377 9.7e-52 208.4 254 55.5
Potri.006G075000 Populus trichocarpa HOM05D006498 ORTHO05D006377 1.3e-51 208.0 311 50.5
CsaV3_1G031910 Cucumis sativus L. HOM05D006498 ORTHO05D006377 2.2e-51 207.2 328 52.7
Lsat_1_v5_gn_9_16541 Lactuca sativa HOM05D006498 ORTHO05D006377 2.8e-51 206.8 459 42.7
Nn4g25125 Nelumbo nucifera HOM05D006498 ORTHO05D006377 2.8e-51 206.8 308 52.9
AL3G49020 Arabidopsis lyrata HOM05D006498 ORTHO05D006377 4.8e-51 206.1 391 46.0
Thhalv10022749m.g Eutrema salsugineum HOM05D006498 ORTHO05D006377 8.2e-51 205.3 299 49.8
unitig_60.g25575 Utricularia gibba HOM05D006498 ORTHO05D006377 8.2e-51 205.3 357 42.3
SalBow3G4321 Salvia bowleyana HOM05D006498 ORTHO05D006377 1.4e-50 204.5 339 47.8
HanXRQChr07g0190541 Helianthus annuus HOM05D006498 ORTHO05D006377 4.1e-50 203.0 388 47.4
Sp3g32630 Schrenkiella parvula HOM05D006498 ORTHO05D006377 4.1e-50 203.0 398 49.0
CANSAT11G0487 Cannabis sativa HOM05D006498 ORTHO05D006377 5.3e-50 202.6 307 53.7
Actinidia23350 Actinidia chinensis HOM05D006498 ORTHO05D006377 2.0e-49 200.7 307 50.2
Migut.N00676 Erythranthe guttata HOM05D006498 ORTHO05D006377 2.0e-49 200.7 405 44.4
Glyma.17G058700 Glycine max HOM05D006498 ORTHO05D006377 4.5e-49 199.5 396 51.3
BolC7t40702H Brassica oleracea HOM05D006498 ORTHO05D006377 5.9e-49 199.1 376 46.3
Oeu003665.1 Olea europaea HOM05D006498 ORTHO05D006377 5.9e-49 199.1 344 50.6
C07p03100 Brassica napus HOM05D006498 ORTHO05D006377 7.7e-49 198.7 376 46.0
Peaxi162Scf00235g00219 Petunia axillaris HOM05D006498 ORTHO05D006377 1.7e-48 197.6 383 44.9
PGR142G3062 Punica granatum HOM05D006498 ORTHO05D006377 1.7e-48 197.6 427 42.2
PGR142G3622 Punica granatum HOM05D006498 ORTHO05D006377 1.7e-48 197.6 427 42.2
Aa31LG8G16310 Aethionema arabicum HOM05D006498 ORTHO05D006377 2.9e-48 196.8 302 50.0
Nitab4.5_0000038g0230 Nicotiana tabacum HOM05D006498 ORTHO05D006377 3.8e-48 196.4 316 48.4
BcaC06g36544 Brassica carinata HOM05D006498 ORTHO05D006377 5.0e-48 196.1 376 45.5
Sc18g0007220 Simmondsia chinensis HOM05D006498 ORTHO05D006377 6.5e-48 195.7 319 48.6
CARHR109730 Cardamine hirsuta HOM05D006498 ORTHO05D006377 1.1e-47 194.9 316 50.6
Aqoxy7G02850 Aquilegia oxysepala HOM05D006498 ORTHO05D006377 1.9e-47 194.1 339 47.2
Sopen09g019810 Solanum pennellii HOM05D006498 ORTHO05D006377 2.5e-47 193.7 316 47.2
Nitab4.5_0005686g0030 Nicotiana tabacum HOM05D006498 ORTHO05D006377 5.5e-47 192.6 309 48.2
BcaB03g16716 Brassica carinata HOM05D006498 ORTHO05D006377 3.6e-46 189.9 296 50.7
Carub.0003s3350 Capsella rubella HOM05D006498 ORTHO05D006377 1.0e-45 188.3 296 51.4
SGA_v2.0_scaffold95G28702 Striga asiatica HOM05D006498 ORTHO05D006377 5.1e-45 186.0 455 40.2
MSTRG.17962 Avicennia marina HOM05D006498 ORTHO05D006377 3.3e-44 183.3 486 38.5
DCAR_004773 Daucus carota HOM05D006498 ORTHO05D006377 4.3e-44 183.0 319 45.5
PSO063G6554 Papaver somniferum HOM05D006498 ORTHO05D006377 7.4e-44 182.2 318 46.9
EL10Ac8g19141 Beta vulgaris HOM05D006498 ORTHO05D006377 1.3e-43 181.4 395 45.1
AUR62025173 Chenopodium quinoa HOM05D006498 ORTHO05D006377 2.2e-43 180.6 235 48.5
PSO170G2385 Papaver somniferum HOM05D006498 ORTHO05D006377 2.2e-43 180.6 320 47.5
CDE05G1404 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 3.1e-42 176.8 312 43.6
BraA07t27953Z Brassica rapa HOM05D006498 ORTHO05D006377 3.4e-41 173.3 381 45.1
Hma1.2p1_0491F.1_g164640 Hydrangea macrophylla HOM05D006498 ORTHO05D006377 5.9e-41 172.6 120 69.2
A07p01520 Brassica napus HOM05D006498 ORTHO05D006377 1.1e-39 168.3 298 48.3
ECA247G1929 Erigeron canadensis HOM05D000109 ORTHO05D006377 4.2e-39 166.4 436 38.1
Lalb_Chr12g0199631 Lupinus albus HOM05D006498 ORTHO05D006377 1.2e-38 164.9 108 74.1
Os02g0175900 Oryza sativa ssp. japonica HOM05D006498 ORTHO05D006377 3.6e-38 163.3 99 80.8
MBI16_g05840_MAGBIO Magnolia biondii HOM05D006498 ORTHO05D006377 4.7e-38 162.9 337 42.1
HPP92_011644 Vanilla planifolia HOM05D006498 ORTHO05D006377 2.3e-37 160.6 302 41.1
Lsat_1_v5_gn_3_41001 Lactuca sativa HOM05D006498 ORTHO05D006377 6.7e-37 159.1 111 73.9
Rhsim13G0054400 Rhododendron simsii HOM05D006498 ORTHO05D006377 6.7e-37 159.1 337 40.7
vmacro02834 Vaccinium macrocarpon HOM05D006498 ORTHO05D006377 2.6e-36 157.1 433 38.1
Zm00001eb233520 Zea mays HOM05D006498 ORTHO05D006377 5.7e-36 156.0 97 78.4
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 2.4e-34 150.6 107 73.8
Lsat_1_v5_gn_7_52821 Lactuca sativa HOM05D006498 ORTHO05D006377 2.4e-34 150.6 111 71.2
Zm00001eb206900 Zea mays HOM05D006498 ORTHO05D006377 1.5e-33 147.9 365 39.7
Lsat_1_v5_gn_5_22180 Lactuca sativa HOM05D006498 ORTHO05D006377 7.7e-33 145.6 97 75.3
AagrBONN_evm.TU.Sc2ySwM_228.1455 Anthoceros agrestis HOM05D006498 ORTHO05D006377 3.8e-32 143.3 233 42.9
Lsat_1_v5_gn_9_15580 Lactuca sativa HOM05D006498 ORTHO05D006377 3.8e-32 143.3 95 75.8
ATR0626G368 Amborella trichopoda HOM05D006498 ORTHO05D006377 8.5e-32 142.1 318 34.9
CDE05G1079 Ceratophyllum demersum HOM05D006498 ORTHO05D006377 2.3e-29 134.0 76 86.8
Cpa.g.sc2680.1 Carica papaya HOM05D006498 ORTHO05D006377 5.2e-29 132.9 288 46.9
Mapoly0001s0081 Marchantia polymorpha HOM05D006498 ORTHO05D006377 3.7e-27 126.7 265 35.8
SMO361G0453 Selaginella moellendorffii HOM05D006498 ORTHO05D006377 3.5e-25 120.2 242 37.6
COL.COLO4_06397 Corchorus olitorius HOM05D006498 ORTHO05D006377 2.2e-24 117.5 64 85.9
Actinidia30000 Actinidia chinensis HOM05D006498 ORTHO05D006377 2.9e-24 117.1 251 43.4
Ah.09g231280 Amaranthus hybridus HOM05D006498 ORTHO05D006377 6.5e-24 115.9 349 39.8
Pp3c15_6280 Physcomitrium patens HOM05D006498 ORTHO05D006377 8.5e-24 115.5 332 33.1
Lalb_Chr13g0299941 Lupinus albus HOM05D006498 ORTHO05D006377 3.2e-23 113.6 262 36.6
CBR_g12030 Chara braunii HOM05D006498 ORTHO05D006377 2.1e-22 110.9 84 64.3
Lj2A1114T36 Lonicera japonica HOM05D006498 ORTHO05D006377 1.4e-21 108.2 271 39.5
Solyc09g055870.2 Solanum lycopersicum HOM05D006498 ORTHO05D006377 8.8e-21 105.5 370 35.1
QL02p046691 Quercus lobata HOM05D006498 ORTHO05D000004 3.3e-20 103.6 246 43.1
QL02p046697 Quercus lobata HOM05D006498 ORTHO05D006377 2.8e-19 100.5 54 85.2
Lsat_1_v5_gn_4_108221 Lactuca sativa HOM05D006498 ORTHO05D006377 1.4e-18 98.2 62 79.0
Lalb_Chr13g0299961 Lupinus albus HOM05D006498 ORTHO05D006377 2.7e-17 94.0 54 83.3
SHI03076 Sapria himalayana HOM05D006498 ORTHO05D006377 5.0e-16 89.7 54 79.6
Solyc09g055850.3 Solanum lycopersicum HOM05D006498 ORTHO05D006377 3.2e-15 87.0 53 77.4
Sed0023288 Sechium edule HOM05D006498 ORTHO05D006377 1.8e-13 81.3 235 34.0
SGA_v2.0_scaffold95G28701 Striga asiatica HOM05D006498 ORTHO05D006377 5.7e-12 76.3 49 69.4
Cre06.g278258 Chlamydomonas reinhardtii HOM05D006498 ORTHO05D006377 4.2e-07 60.1 120 36.7


User provided reference genes

Program Settings