Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3307 Fragaria x ananassa HOM05D007757 ORTHO05D009619 7.5e-77 290.4 144 100.0
FvH4_4g27340 Fragaria vesca HOM05D007757 ORTHO05D009619 2.8e-76 288.5 144 99.3
FAN12G3266 Fragaria x ananassa HOM05D007757 ORTHO05D009619 8.2e-76 287.0 144 98.6
FAN07G0332 Fragaria x ananassa HOM05D007757 ORTHO05D009619 6.1e-71 270.8 144 93.1
RcHm_v2.0_Chr4g0435141 Rosa chinensis HOM05D007757 ORTHO05D009619 1.7e-60 236.1 141 85.8
Prupe.1G311500 Prunus persica HOM05D007757 ORTHO05D009619 4.7e-23 111.7 134 51.5
MD13G1041700 Malus domestica HOM05D007757 ORTHO05D009619 2.9e-20 102.4 112 52.7
Peaxi162Scf00382g00073 Petunia axillaris HOM05D007757 ORTHO05D009619 7.3e-16 87.8 115 40.9
MD16G1042600 Malus domestica HOM05D007757 ORTHO05D009619 6.2e-15 84.7 59 62.7
Peaxi162Scf00382g00086 Petunia axillaris HOM05D007757 ORTHO05D009619 6.2e-15 84.7 115 39.1
Nitab4.5_0000791g0090 Nicotiana tabacum HOM05D007757 ORTHO05D009619 6.9e-14 81.3 118 39.8
Haze_17487 Corylus avellana HOM05D007757 ORTHO05D009619 1.2e-13 80.5 136 43.4
CAN.G610.82 Capsicum annuum HOM05D007757 ORTHO05D009619 1.5e-13 80.1 114 41.2
Solyc05g009340.1 Solanum lycopersicum HOM05D007757 ORTHO05D009619 1.5e-13 80.1 105 41.0
Sopen05g005100 Solanum pennellii HOM05D007757 ORTHO05D009619 3.4e-13 79.0 105 41.0
Potri.010G124700 Populus trichocarpa HOM05D007757 ORTHO05D009619 4.5e-13 78.6 133 39.1
PGSC0003DMG400014580 Solanum tuberosum HOM05D007757 ORTHO05D009619 7.6e-13 77.8 106 40.6
DCAR_030156 Daucus carota HOM05D007757 ORTHO05D009619 9.9e-13 77.4 91 49.5
CiPaw.15G085600 Carya illinoinensis HOM05D007757 ORTHO05D009619 4.9e-12 75.1 142 40.1
TWI75G0183 Tripterygium wilfordii HOM05D007757 ORTHO05D009619 6.4e-12 74.7 139 38.8
THA.LOC104800008 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 8.4e-12 74.3 49 63.3
Sabra10G0094600 Salix brachista HOM05D007757 ORTHO05D009619 2.4e-11 72.8 134 38.1
TPR.G1503 Trifolium pratense HOM05D007757 ORTHO05D009619 3.2e-11 72.4 62 58.1
THA.LOC104821934 Tarenaya hassleriana HOM05D007757 ORTHO05D009619 4.2e-11 72.0 49 61.2
Lalb_Chr06g0166051 Lupinus albus HOM05D007757 ORTHO05D009619 7.1e-11 71.2 63 55.6
Duzib248G1397 Durio zibethinus HOM05D007757 ORTHO05D009619 9.3e-11 70.9 136 39.0
Lalb_Chr02g0145961 Lupinus albus HOM05D007757 ORTHO05D009619 1.2e-10 70.5 140 39.3
COL.COLO4_37757 Corchorus olitorius HOM05D007757 ORTHO05D009619 1.6e-10 70.1 51 58.8
Actinidia14892 Actinidia chinensis HOM05D007757 ORTHO05D009619 2.1e-10 69.7 109 35.8
Gorai.002G217900 Gossypium raimondii HOM05D007757 ORTHO05D009619 3.5e-10 68.9 64 54.7
Gohir.D01G175600 Gossypium hirsutum HOM05D007757 ORTHO05D009619 4.6e-10 68.6 64 54.7
Ca_11172_v3 Cicer arietinum L. HOM05D007757 ORTHO05D009619 7.9e-10 67.8 141 36.2
Thecc.02G230200 Theobroma cacao HOM05D007757 ORTHO05D009619 7.9e-10 67.8 127 40.2
Actinidia16654 Actinidia chinensis HOM05D007757 ORTHO05D009619 1.3e-09 67.0 111 38.7
BcaC08g46271 Brassica carinata HOM05D007757 ORTHO05D009619 1.8e-09 66.6 67 52.2
A07p34900 Brassica napus HOM05D007757 ORTHO05D009619 1.8e-09 66.6 67 52.2
C06p41430 Brassica napus HOM05D007757 ORTHO05D009619 1.8e-09 66.6 67 52.2
BolC6t39280H Brassica oleracea HOM05D007757 ORTHO05D009619 1.8e-09 66.6 67 52.2
Cpa.g.sc1.36 Carica papaya HOM05D007757 ORTHO05D009619 1.8e-09 66.6 79 45.6
Medtr1g110790 Medicago truncatula HOM05D007757 ORTHO05D009619 1.8e-09 66.6 62 50.0
CANSAT01G0578 Cannabis sativa HOM05D007757 ORTHO05D009619 2.3e-09 66.2 74 48.6
Cc11_g10120 Coffea canephora HOM05D007757 ORTHO05D009619 3.0e-09 65.9 129 34.9
Manes.06G067700 Manihot esculenta HOM05D007757 ORTHO05D009619 3.0e-09 65.9 130 38.5
BcaB03g15824 Brassica carinata HOM05D007757 ORTHO05D009619 3.9e-09 65.5 67 50.7
BcaC03g14960 Brassica carinata HOM05D007757 ORTHO05D009619 6.7e-09 64.7 56 57.1
C02p24780 Brassica napus HOM05D007757 ORTHO05D009619 6.7e-09 64.7 56 57.1
BolC2t08570H Brassica oleracea HOM05D007757 ORTHO05D009619 6.7e-09 64.7 56 57.1
Psat6g227960 Pisum sativum HOM05D007757 ORTHO05D009619 2.5e-08 62.8 145 34.5
Sp5g23570 Schrenkiella parvula HOM05D007757 ORTHO05D009619 2.5e-08 62.8 56 55.4
BcaB05g24389 Brassica carinata HOM05D007757 ORTHO05D009619 3.3e-08 62.4 56 55.4
BraA02t06576Z Brassica rapa HOM05D007757 ORTHO05D009619 3.3e-08 62.4 56 55.4
VMungo0720G1194 Vigna mungo HOM05D007757 ORTHO05D009619 3.3e-08 62.4 51 54.9
A02p15100 Brassica napus HOM05D007757 ORTHO05D009619 4.3e-08 62.0 56 51.8
CARHR061280 Cardamine hirsuta HOM05D007757 ORTHO05D009619 5.6e-08 61.6 42 57.1
Phvul.007G027400 Phaseolus vulgaris HOM05D007757 ORTHO05D009619 5.6e-08 61.6 51 54.9
Gohir.D04G138100 Gossypium hirsutum HOM05D007757 ORTHO05D009619 7.4e-08 61.2 80 43.8
Gorai.012G123000 Gossypium raimondii HOM05D007757 ORTHO05D009619 7.4e-08 61.2 80 43.8
Carub.0002s1501 Capsella rubella HOM05D007757 ORTHO05D009619 2.1e-07 59.7 55 47.3
AL2G27370 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 3.7e-07 58.9 39 56.4
MSTRG.2233 Avicennia marina HOM05D007757 ORTHO05D009619 3.7e-07 58.9 132 34.1
Thhalv10019384m.g Eutrema salsugineum HOM05D007757 ORTHO05D009619 3.7e-07 58.9 40 57.5
BcaB03g14042 Brassica carinata HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
BcaC06g35205 Brassica carinata HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
A07p12600 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
C07p18700 Brassica napus HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
BolC7t42380H Brassica oleracea HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
BraA07t29038Z Brassica rapa HOM05D007757 ORTHO05D009619 4.8e-07 58.5 52 44.2
AT1G25422 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 6.2e-07 58.2 48 47.9
Glyma.10G274100 Glycine max HOM05D007757 ORTHO05D009619 8.1e-07 57.8 51 51.0
Glyma.20G115900 Glycine max HOM05D007757 ORTHO05D009619 8.1e-07 57.8 51 51.0
Rhsim09G0107900 Rhododendron simsii HOM05D007757 ORTHO05D009619 8.1e-07 57.8 103 37.9
AT1G68500 Arabidopsis thaliana HOM05D007757 ORTHO05D009619 1.1e-06 57.4 39 53.8
Sp1g22790 Schrenkiella parvula HOM05D007757 ORTHO05D009619 1.1e-06 57.4 52 42.3
AL1G39890 Arabidopsis lyrata HOM05D007757 ORTHO05D009619 3.1e-06 55.8 48 45.8
Migut.E00343 Erythranthe guttata HOM05D007757 ORTHO05D009619 5.3e-06 55.1 140 35.7


User provided reference genes

Program Settings