Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 0.0e+00 2313.9 1196 100.0
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 0.0e+00 2290.8 1196 99.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 0.0e+00 2164.8 1249 91.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 0.0e+00 2033.8 1108 96.2
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 0.0e+00 1696.4 1313 72.4
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.6e-268 929.5 1215 50.2
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 8.0e-249 864.8 1232 47.7
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.7e-204 716.8 412 92.2
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.5e-162 577.4 1278 37.1
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.1e-152 545.4 1275 37.0
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.2e-143 515.4 1244 37.8
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 6.5e-134 483.0 1280 35.0
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.0e-127 461.5 1263 33.6
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.6e-116 425.2 1218 32.9
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.3e-115 421.4 1263 32.9
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 7.5e-114 416.4 1236 33.3
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 8.6e-102 376.3 1204 32.4
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.1e-96 357.5 1229 30.9
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.6e-95 355.5 1232 31.2
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.9e-94 350.9 1274 30.5
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.3e-93 347.4 1209 29.6
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 4.0e-91 340.9 1213 31.9
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 6.4e-89 333.6 1209 28.5
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-86 325.5 1239 29.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.5e-85 321.6 1220 29.5
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.2e-84 319.3 1264 30.2
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.6e-84 317.8 1265 29.2
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 4.7e-84 317.4 1204 30.2
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.3e-83 315.1 1238 29.9
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 2.0e-82 312.0 1198 29.5
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 5.8e-82 310.5 1248 29.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 9.9e-82 309.7 1264 29.2
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.9e-81 308.1 1234 30.2
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-81 307.4 1245 29.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.1e-80 306.2 1267 28.5
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.0e-78 299.7 1156 29.8
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 5.1e-78 297.4 1217 30.2
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.1e-77 296.2 1236 30.3
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 9.6e-77 293.1 1230 29.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.2e-76 292.7 1279 29.2
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.8e-76 291.6 1247 29.3
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 6.2e-76 290.4 1222 29.3
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.1e-75 288.1 1243 28.7
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 8.9e-75 286.6 1237 28.3
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.2e-74 286.2 1225 29.1
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.9e-73 280.8 1261 28.6
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 2.7e-71 275.0 1208 28.6
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 3.5e-71 274.6 1205 29.4
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.3e-69 268.1 1217 29.5
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.3e-69 267.7 508 40.4
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.9e-65 254.2 1229 28.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 4.2e-64 251.1 776 34.3
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.2e-63 249.6 1214 28.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 3.9e-62 244.6 898 30.6
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.6e-61 240.7 1218 28.2
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.1e-59 235.0 1215 26.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.5e-58 231.1 514 36.8
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.2e-56 224.9 1028 27.6
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 7.1e-56 223.8 1189 26.0
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.6e-55 221.1 1225 27.1
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 6.0e-55 220.7 1227 25.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-54 219.2 1218 25.8
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.7e-54 217.2 287 50.5
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.9e-53 215.7 1066 26.9
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.4e-51 209.5 498 36.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 5.3e-51 207.6 427 39.3
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.3e-51 207.6 1215 27.5
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.3e-51 207.6 1215 27.5
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.0e-51 206.8 513 35.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.2e-50 206.5 1240 26.1
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.0e-49 203.4 1031 27.0
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.2e-49 202.2 516 36.0
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-48 198.7 1179 26.4
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.6e-47 194.5 1180 26.2
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.3e-46 193.0 275 46.9
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.7e-46 190.7 1234 25.0
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.7e-46 190.7 903 28.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.5e-45 189.5 235 51.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 3.3e-45 188.3 1221 25.9
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 5.3e-43 181.0 1229 25.1
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.0e-41 176.8 173 57.8
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.2e-41 175.6 1208 25.2
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.5e-40 172.2 1301 24.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.6e-39 167.9 230 44.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.3e-36 159.8 271 42.4
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.7e-36 158.3 406 31.0
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 3.1e-35 155.2 898 25.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.5e-34 151.4 1153 25.9
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.6e-31 142.9 1130 24.5
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.6e-31 141.4 231 45.0
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 3.9e-30 138.3 478 31.4
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.9e-30 138.3 234 43.2
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.7e-28 132.9 388 33.0
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.7e-28 132.9 296 38.2
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.8e-28 132.1 231 43.7
RcHm_v2.0_Chr2g0127241 Rosa chinensis HOM05D005839 ORTHO05D005686 6.9e-27 127.5 162 50.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.5e-26 126.3 160 48.8
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 3.4e-26 125.2 128 54.7
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-25 123.6 106 58.5
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.7e-25 122.9 234 39.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.2e-25 122.5 267 36.7
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.0e-25 121.3 113 56.6
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 8.5e-25 120.6 217 41.5
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 8.5e-25 120.6 428 29.0
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.1e-23 115.9 1208 24.8
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 6.1e-23 114.4 65 78.5
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.0e-22 113.6 283 33.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.8e-20 105.5 138 47.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 8.2e-20 104.0 121 47.9
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 3.1e-19 102.1 99 54.5
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.3e-19 101.3 117 49.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 4.5e-18 98.2 122 46.7
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.7e-17 96.3 442 28.7
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-17 95.9 419 31.0
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 8.5e-17 94.0 121 43.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.1e-16 93.6 123 46.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-16 93.2 282 30.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.2e-16 92.0 277 31.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 5.5e-16 91.3 133 45.9
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 9.4e-16 90.5 133 44.4
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.2e-15 90.1 380 27.4
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.6e-15 89.7 383 27.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 4.7e-15 88.2 125 42.4
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.0e-14 87.0 373 27.3
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.0e-14 87.0 703 24.6
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.8e-14 86.3 381 26.8
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 4.0e-14 85.1 114 45.6
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.2e-13 83.6 115 40.9
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.2e-13 83.6 279 31.9
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.7e-13 81.3 675 24.0
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 9.7e-13 80.5 170 37.6
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.3e-12 80.1 56 67.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.8e-12 79.0 71 50.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.8e-12 79.0 107 40.2
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 2.8e-12 79.0 108 43.5
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.8e-12 79.0 332 30.1
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.4e-11 75.9 1196 21.9
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 9.1e-11 73.9 580 24.5
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 3.5e-10 72.0 542 22.0
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.3e-09 70.1 261 27.6
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 2.2e-09 69.3 78 43.6
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 7.2e-08 64.3 41 56.1
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.2e-07 63.5 128 30.5
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 2.7e-07 62.4 307 27.0
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.6e-07 62.0 80 38.8
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.3e-06 59.3 31 67.7
FvH4_5g02451 Fragaria vesca HOM05D020505 ORTHO05D005686 5.2e-06 58.2 69 50.7
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 6.8e-06 57.8 54 46.3


User provided reference genes

Program Settings