Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 7.7e-118 427.2 217 100.0
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.8e-112 407.9 213 99.1
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.9e-80 302.4 223 74.9
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.7e-80 302.0 224 75.4
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.6e-69 264.6 203 72.9
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.9e-68 263.1 135 97.0
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.3e-68 262.3 135 97.0
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 1.2e-67 260.4 135 96.3
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.2e-67 260.4 135 96.3
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.4e-64 248.1 135 93.3
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 8.9e-58 227.6 137 84.7
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 5.4e-55 218.4 254 57.1
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 2.1e-35 153.3 161 57.8
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 2.8e-35 152.9 153 58.2
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 7.6e-33 144.8 150 57.3
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 4.3e-28 129.0 158 51.3
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 4.1e-26 122.5 160 50.0
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 1.5e-25 120.6 135 54.8
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 5.9e-25 118.6 135 55.6
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 3.8e-24 115.9 147 49.0
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 5.0e-24 115.5 147 49.0
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 8.5e-24 114.8 148 51.4
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 8.5e-24 114.8 144 52.8
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 8.5e-24 114.8 153 46.4
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 2.5e-23 113.2 143 52.4
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 2.5e-23 113.2 144 52.1
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 5.5e-23 112.1 153 50.3
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 7.2e-23 111.7 148 48.6
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 9.3e-23 111.3 142 50.0
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 2.1e-22 110.2 150 46.7
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 2.7e-22 109.8 160 45.0
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 3.6e-22 109.4 149 47.7
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 7.9e-22 108.2 139 49.6
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 1.0e-21 107.8 146 50.0
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 1.8e-21 107.1 151 48.3
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 3.0e-21 106.3 159 44.7
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 3.0e-21 106.3 147 50.3
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 5.1e-21 105.5 156 47.4
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 5.1e-21 105.5 146 47.9
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.1e-20 104.4 123 52.0
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 1.1e-20 104.4 141 48.2
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 1.1e-20 104.4 146 44.5
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 1.5e-20 104.0 145 46.9
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 1.5e-20 104.0 155 45.2
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 1.9e-20 103.6 93 61.3
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 1.9e-20 103.6 93 61.3
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 7.4e-20 101.7 91 59.3
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 7.4e-20 101.7 171 41.5
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 9.7e-20 101.3 99 55.6
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.3e-19 100.9 67 86.6
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 1.3e-19 100.9 130 48.5
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 2.8e-19 99.8 109 49.5
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 2.8e-19 99.8 144 45.8
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 3.7e-19 99.4 77 63.6
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.7e-19 99.4 148 45.3
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.7e-19 99.4 139 48.2
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 3.7e-19 99.4 141 46.1
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 4.8e-19 99.0 127 48.0
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 6.3e-19 98.6 153 42.5
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 6.3e-19 98.6 74 67.6
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 6.3e-19 98.6 74 67.6
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 6.3e-19 98.6 141 44.7
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 6.3e-19 98.6 147 49.7
FAN27G0507 Fragaria x ananassa HOM05D005731 ORTHO05D000222 8.2e-19 98.2 62 88.7
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 1.1e-18 97.8 117 52.1
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 1.4e-18 97.4 152 41.4
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 1.4e-18 97.4 149 44.3
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 1.4e-18 97.4 138 46.4
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 1.8e-18 97.1 131 47.3
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 2.4e-18 96.7 159 44.7
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 2.4e-18 96.7 74 67.6
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 4.1e-18 95.9 81 60.5
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 5.3e-18 95.5 77 63.6
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 6.9e-18 95.1 93 55.9
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 9.1e-18 94.7 84 60.7
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 9.1e-18 94.7 77 63.6
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 1.2e-17 94.4 119 48.7
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 1.2e-17 94.4 91 54.9
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 2.0e-17 93.6 171 43.9
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 2.6e-17 93.2 162 41.4
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 2.6e-17 93.2 140 45.0
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 3.4e-17 92.8 162 42.0
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 3.4e-17 92.8 171 43.9
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 3.4e-17 92.8 84 59.5
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 4.5e-17 92.4 162 42.0
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 5.9e-17 92.0 79 62.0
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 7.7e-17 91.7 140 44.3
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 1.0e-16 91.3 83 57.8
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 1.3e-16 90.9 150 41.3
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 1.3e-16 90.9 84 58.3
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 1.7e-16 90.5 84 57.1
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 1.7e-16 90.5 79 62.0
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 2.2e-16 90.1 79 59.5
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 2.2e-16 90.1 77 58.4
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 2.2e-16 90.1 133 45.9
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 5.0e-16 89.0 79 58.2
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 5.0e-16 89.0 78 57.7
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 6.5e-16 88.6 176 39.8
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 1.4e-15 87.4 138 44.9
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 1.9e-15 87.0 198 38.4
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 3.2e-15 86.3 75 57.3
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 4.2e-15 85.9 84 54.8
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 4.2e-15 85.9 140 42.9
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 4.2e-15 85.9 140 42.9
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 4.2e-15 85.9 71 57.7
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 5.5e-15 85.5 140 42.9
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 9.4e-15 84.7 138 42.8
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 9.4e-15 84.7 73 56.2
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 1.2e-14 84.3 84 48.8
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 2.1e-14 83.6 84 53.6
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 2.1e-14 83.6 136 40.4
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 3.6e-14 82.8 154 41.6
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 1.0e-13 81.3 87 55.2
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 6.7e-13 78.6 93 40.9
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 8.8e-13 78.2 133 39.1
FAN13G2494 Fragaria x ananassa HOM05D014123 ORTHO05D022585 1.1e-12 77.8 59 76.3
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 1.1e-12 77.8 110 40.0
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 1.1e-12 77.8 110 40.0
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 1.5e-12 77.4 148 38.5
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.4e-10 70.9 184 35.3
FAN15G0706 Fragaria x ananassa HOM05D000145 ORTHO05D000115 9.1e-10 68.2 37 94.6
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.1e-10 68.2 36 97.2
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 3.4e-09 66.2 171 33.3
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 8.5e-08 61.6 101 45.5
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 5.5e-07 58.9 192 34.4
Os09g0413200 Oryza sativa ssp. japonica HOM05D004646 ORTHO05D005829 6.1e-06 55.5 48 52.1


User provided reference genes

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