Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 1.8e-139 499.6 326 100.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.8e-139 499.6 326 100.0
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 4.2e-136 488.4 326 98.2
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.6e-135 485.3 327 98.2
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 3.6e-135 485.3 326 97.9
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.5e-104 382.9 331 84.6
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 5.8e-69 265.4 337 67.4
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.2e-68 263.5 335 66.9
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 4.9e-68 262.3 362 64.6
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.3e-55 221.1 338 62.4
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 8.2e-55 218.4 346 60.4
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 8.2e-55 218.4 346 59.0
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 4.0e-54 216.1 331 53.2
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 6.9e-54 215.3 344 53.8
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 3.2e-51 206.5 346 60.1
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 5.5e-51 205.7 343 53.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 2.1e-50 203.8 339 60.5
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 7.9e-50 201.8 339 55.2
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 1.3e-49 201.1 331 60.4
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-49 200.7 335 43.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.0e-49 199.9 335 52.5
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.1e-49 199.1 337 51.0
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 1.1e-48 198.0 341 56.3
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 2.4e-46 190.3 332 61.1
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.1e-46 189.9 338 50.0
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.1e-46 189.9 338 50.0
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 9.0e-46 188.3 334 52.1
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.5e-45 186.0 338 49.4
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.5e-45 186.0 348 50.9
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 4.5e-45 186.0 349 55.0
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.3e-44 184.5 343 56.6
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 1.3e-44 184.5 336 51.2
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 5.0e-44 182.6 345 53.3
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 9.4e-43 178.3 344 50.3
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.7e-42 176.8 342 52.3
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 6.1e-42 175.6 339 51.0
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 1.4e-41 174.5 345 49.9
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.8e-41 174.1 358 47.8
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 3.0e-41 173.3 352 48.9
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.1e-40 171.4 329 50.5
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.5e-40 171.0 330 48.5
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 2.5e-40 170.2 329 49.2
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.5e-40 170.2 333 46.2
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.3e-40 169.5 334 55.7
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.2e-39 167.2 332 48.2
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.1e-38 164.9 335 50.4
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 1.1e-38 164.9 335 50.4
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.8e-38 164.1 333 49.2
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 5.3e-38 162.5 328 54.0
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 7.7e-37 158.7 330 47.6
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.7e-36 157.5 333 41.1
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 5.0e-36 156.0 349 38.7
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 8.5e-36 155.2 340 48.8
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 1.1e-35 154.8 347 37.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 1.2e-34 151.4 369 43.9
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 7.9e-34 148.7 320 48.4
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 5.1e-33 146.0 318 42.1
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.7e-33 145.6 345 50.1
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.7e-33 145.6 345 50.1
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 6.7e-33 145.6 345 50.1
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.1e-32 144.8 339 38.1
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.0e-32 144.1 328 48.2
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 2.6e-32 143.7 338 44.1
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 5.7e-32 142.5 327 46.8
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.4e-32 142.1 343 38.5
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 9.7e-32 141.7 322 48.8
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 1.7e-31 141.0 311 54.0
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.2e-31 140.6 365 45.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.8e-31 140.2 339 42.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.8e-30 137.5 309 46.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.1e-30 136.7 324 49.1
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.1e-30 136.7 365 44.9
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 1.2e-29 134.8 342 48.2
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.2e-29 134.8 371 42.6
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.2e-29 134.8 336 47.9
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.0e-28 131.7 336 33.6
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.0e-28 131.7 331 51.4
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.3e-28 131.3 334 45.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 3.8e-28 129.8 318 42.8
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 3.8e-28 129.8 318 42.8
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 6.5e-28 129.0 341 35.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.5e-28 129.0 318 37.1
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.1e-27 128.3 340 33.2
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-27 127.9 331 36.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-27 127.5 320 44.7
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 1.9e-27 127.5 315 41.6
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 3.2e-27 126.7 343 47.5
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.2e-27 126.3 332 33.4
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 4.2e-27 126.3 318 43.1
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-26 124.4 342 47.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.6e-26 124.4 337 34.7
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 8.0e-26 122.1 122 61.5
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.0e-25 121.7 343 47.2
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-25 121.3 278 38.8
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 1.8e-25 120.9 337 45.7
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.8e-25 120.9 337 45.4
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.8e-25 120.9 333 46.5
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 3.0e-25 120.2 344 45.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 3.0e-25 120.2 344 45.1
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 3.9e-25 119.8 284 39.4
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 8.8e-25 118.6 394 45.9
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.5e-24 117.9 339 46.0
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.5e-24 117.9 337 45.1
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.3e-24 116.7 339 35.7
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 3.3e-24 116.7 334 35.9
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 5.7e-24 115.9 309 43.7
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.7e-24 115.9 337 46.0
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 7.4e-24 115.5 346 42.8
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.2e-23 114.0 326 40.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.8e-23 113.6 307 44.6
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.8e-23 113.6 320 42.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 6.3e-23 112.5 341 45.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 6.3e-23 112.5 326 46.0
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 6.3e-23 112.5 290 33.4
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 8.2e-23 112.1 343 45.5
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 1.8e-22 110.9 323 36.2
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 4.1e-22 109.8 324 36.4
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.1e-22 109.8 333 37.8
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 5.3e-22 109.4 268 55.2
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 7.0e-22 109.0 314 49.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 7.0e-22 109.0 296 38.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 9.1e-22 108.6 341 38.7
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.2e-21 108.2 346 45.4
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.6e-21 107.8 323 44.0
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.6e-21 107.1 327 40.7
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 7.7e-21 105.5 337 35.0
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.0e-20 105.1 317 43.2
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.9e-20 103.6 330 38.5
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.0e-20 102.8 325 32.0
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 8.5e-20 102.1 342 39.2
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.2e-18 98.2 318 32.7
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.2e-18 98.2 162 46.3
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 2.1e-18 97.4 335 43.6
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 6.1e-18 95.9 332 38.0
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 8.0e-18 95.5 297 49.5
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-17 95.1 218 50.9
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.4e-16 89.7 323 30.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 2.8e-15 87.0 319 32.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 6.3e-15 85.9 338 37.0
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 1.2e-13 81.6 324 42.3
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 4.5e-13 79.7 269 41.3
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 7.7e-13 79.0 271 41.0
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 2.1e-10 70.9 326 32.5
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 2.7e-10 70.5 323 32.5
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 8.0e-10 68.9 309 36.2
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.4e-09 68.2 340 38.2
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 5.2e-09 66.2 322 29.5
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 2.8e-07 60.5 40 75.0
Carub.0001s1340 Capsella rubella HOM05D014954 ORTHO05D016461 1.4e-06 58.2 118 37.3
HPP92_007737 Vanilla planifolia HOM05D004533 ORTHO05D005347 9.1e-06 55.5 103 39.8


User provided reference genes

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