Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G3012 Fragaria x ananassa HOM05D000038 ORTHO05D029727 1.3e-57 226.1 112 100.0
FvH4_6g51830 Fragaria vesca HOM05D000013 ORTHO05D000011 1.6e-21 106.3 68 82.4
FAN02G0143 Fragaria x ananassa HOM05D000013 ORTHO05D000689 1.6e-21 106.3 66 86.4
FAN05G0868 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.6e-21 106.3 66 86.4
FvH4_6g44064 Fragaria vesca HOM05D000013 ORTHO05D000011 2.5e-19 99.0 66 78.8
RcHm_v2.0_Chr2g0160651 Rosa chinensis HOM05D000013 ORTHO05D000011 1.0e-17 93.6 74 66.2
FAN05G0451 Fragaria x ananassa HOM05D000013 ORTHO05D204606 2.2e-15 85.9 62 75.8
RcHm_v2.0_Chr2g0160831 Rosa chinensis HOM05D000013 ORTHO05D000011 1.1e-14 83.6 68 64.7
RcHm_v2.0_Chr4g0405661 Rosa chinensis HOM05D000013 ORTHO05D000011 1.6e-13 79.7 59 66.1
MD09G1098900 Malus domestica HOM05D000038 ORTHO05D000689 3.5e-13 78.6 68 61.8
QL08p036078 Quercus lobata HOM05D000013 ORTHO05D000689 8.5e-12 73.9 63 63.5
FvH4_4g01510 Fragaria vesca HOM05D063359 ORTHO05D045726 1.5e-11 73.2 48 79.2
MD09G1095900 Malus domestica HOM05D000013 ORTHO05D000011 1.9e-11 72.8 68 54.4
Cpa.g.sc34.57 Carica papaya HOM05D000038 ORTHO05D000689 4.2e-11 71.6 66 51.5
MD09G1094800 Malus domestica HOM05D000013 ORTHO05D000689 5.5e-11 71.2 66 56.1
RcHm_v2.0_Chr2g0161171 Rosa chinensis HOM05D000038 ORTHO05D000689 5.5e-11 71.2 73 54.8
QL08p036241 Quercus lobata HOM05D000038 ORTHO05D000689 7.2e-11 70.9 63 58.7
CiPaw.03G166900 Carya illinoinensis HOM05D000038 ORTHO05D000689 9.4e-11 70.5 76 53.9
MD09G1094400 Malus domestica HOM05D000013 ORTHO05D000011 1.2e-10 70.1 68 52.9
RcHm_v2.0_Chr2g0161191 Rosa chinensis HOM05D000038 ORTHO05D000689 1.2e-10 70.1 66 59.1
MD17G1087200 Malus domestica HOM05D000038 ORTHO05D000689 2.1e-10 69.3 66 62.1
Haze_13031 Corylus avellana HOM05D000013 ORTHO05D000689 3.6e-10 68.6 66 59.1
FAN02G3605 Fragaria x ananassa HOM05D000038 ORTHO05D000689 3.6e-10 68.6 66 57.6
MD09G1095200 Malus domestica HOM05D000013 ORTHO05D000011 3.6e-10 68.6 68 51.5
CANSAT64G2784 Cannabis sativa HOM05D000038 ORTHO05D000689 4.7e-10 68.2 66 57.6
RcHm_v2.0_Chr1g0318601 Rosa chinensis HOM05D000013 ORTHO05D000011 6.1e-10 67.8 56 64.3
CiPaw.03G167200 Carya illinoinensis HOM05D000038 ORTHO05D000689 8.0e-10 67.4 76 52.6
COL.COLO4_04404 Corchorus olitorius HOM05D000013 ORTHO05D000689 1.0e-09 67.0 79 50.6
MD17G1088500 Malus domestica HOM05D000013 ORTHO05D000689 1.4e-09 66.6 66 53.0
QL08p036165 Quercus lobata HOM05D000013 ORTHO05D000689 1.4e-09 66.6 72 52.8
COL.COLO4_13063 Corchorus olitorius HOM05D000013 ORTHO05D000689 1.8e-09 66.2 72 47.2
COL.COLO4_13065 Corchorus olitorius HOM05D000013 ORTHO05D000689 1.8e-09 66.2 68 52.9
Haze_13044 Corylus avellana HOM05D000038 ORTHO05D000689 1.8e-09 66.2 72 54.2
Prupe.3G227500 Prunus persica HOM05D000038 ORTHO05D000689 1.8e-09 66.2 66 53.0
CiPaw.03G167100 Carya illinoinensis HOM05D000038 ORTHO05D000689 2.3e-09 65.9 68 52.9
QL08p036128 Quercus lobata HOM05D000013 ORTHO05D000689 2.3e-09 65.9 64 56.2
Actinidia39295 Actinidia chinensis HOM05D000038 ORTHO05D000689 3.0e-09 65.5 66 54.5
DCAR_002165 Daucus carota HOM05D000038 ORTHO05D000689 3.0e-09 65.5 57 54.4
FvH4_6g44310 Fragaria vesca HOM05D000038 ORTHO05D000689 3.0e-09 65.5 66 56.1
FAN14G0708 Fragaria x ananassa HOM05D000038 ORTHO05D000689 3.0e-09 65.5 66 56.1
Haze_13039 Corylus avellana HOM05D000038 ORTHO05D000689 4.0e-09 65.1 66 56.1
Oeu012964.1 Olea europaea HOM05D000013 ORTHO05D029727 4.0e-09 65.1 68 48.5
COL.COLO4_04406 Corchorus olitorius HOM05D000013 ORTHO05D000689 5.2e-09 64.7 66 56.1
Potri.019G119200 Populus trichocarpa HOM05D000038 ORTHO05D000689 5.2e-09 64.7 66 51.5
Hma1.2p1_1090F.1_g255780 Hydrangea macrophylla HOM05D000038 ORTHO05D000689 6.8e-09 64.3 71 52.1
Nitab4.5_0010290g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 6.8e-09 64.3 68 51.5
DCAR_002161 Daucus carota HOM05D000038 ORTHO05D000689 8.8e-09 63.9 70 47.1
FAN05G5313 Fragaria x ananassa HOM05D000038 ORTHO05D000689 8.8e-09 63.9 66 54.5
FAN09G0976 Fragaria x ananassa HOM05D000038 ORTHO05D000689 8.8e-09 63.9 66 54.5
Potri.013G121000 Populus trichocarpa HOM05D000038 ORTHO05D000689 1.2e-08 63.5 66 51.5
Potri.013G121550 Populus trichocarpa HOM05D000013 ORTHO05D029727 1.2e-08 63.5 60 56.7
Ciclev10018024m.g Citrus clementina HOM05D000038 ORTHO05D000689 1.5e-08 63.2 71 54.9
Haze_13029 Corylus avellana HOM05D000013 ORTHO05D000689 1.5e-08 63.2 75 52.0
DCAR_002163 Daucus carota HOM05D000038 ORTHO05D000689 1.5e-08 63.2 57 52.6
Potri.013G149500 Populus trichocarpa HOM05D000038 ORTHO05D000689 1.5e-08 63.2 66 51.5
Prupe.3G227300 Prunus persica HOM05D000038 ORTHO05D000689 1.5e-08 63.2 66 51.5
CANSAT64G2175 Cannabis sativa HOM05D000038 ORTHO05D000689 2.0e-08 62.8 66 51.5
PGSC0003DMG400042814 Solanum tuberosum HOM05D000038 ORTHO05D000689 2.0e-08 62.8 67 52.2
Sabra13G0120600 Salix brachista HOM05D000013 ORTHO05D000689 2.6e-08 62.4 66 50.0
DCAR_002164 Daucus carota HOM05D000038 ORTHO05D000689 3.4e-08 62.0 70 48.6
Solyc07g053220.2 Solanum lycopersicum HOM05D000038 ORTHO05D000689 4.4e-08 61.6 67 52.2
Sopen07g026780 Solanum pennellii HOM05D000038 ORTHO05D000689 4.4e-08 61.6 67 52.2
CSS0028738 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.7e-08 61.2 66 45.5
Peaxi162Scf00324g00820 Petunia axillaris HOM05D000013 ORTHO05D000011 5.7e-08 61.2 68 45.6
TAR627G1113 Trochodendron aralioides HOM05D000013 ORTHO05D000689 5.7e-08 61.2 68 47.1
CSS0007750 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.5e-08 60.8 66 45.5
DCAR_017153 Daucus carota HOM05D000013 ORTHO05D000689 7.5e-08 60.8 55 56.4
Oeu025470.3 Olea europaea HOM05D000013 ORTHO05D000011 7.5e-08 60.8 61 52.5
THA.LOC104798387 Tarenaya hassleriana HOM05D000038 ORTHO05D000689 7.5e-08 60.8 42 66.7
CANSAT64G2836 Cannabis sativa HOM05D000013 ORTHO05D000011 9.8e-08 60.5 60 51.7
Oeu017558.1 Olea europaea HOM05D000013 ORTHO05D000011 9.8e-08 60.5 63 49.2
Oeu029434.1 Olea europaea HOM05D000013 ORTHO05D000011 9.8e-08 60.5 56 55.4
CSS0050341 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-07 60.1 66 43.9
Ciclev10014281m.g Citrus clementina HOM05D000038 ORTHO05D000689 1.3e-07 60.1 58 53.4
Hma1.2p1_2289F.1_g319000 Hydrangea macrophylla HOM05D000013 ORTHO05D000689 1.7e-07 59.7 57 56.1
MD17G1084200 Malus domestica HOM05D000013 ORTHO05D017003 1.7e-07 59.7 70 48.6
RcHm_v2.0_Chr4g0405691 Rosa chinensis HOM05D000013 ORTHO05D000689 1.7e-07 59.7 44 68.2
Ciclev10014278m.g Citrus clementina HOM05D000038 ORTHO05D000689 2.8e-07 58.9 53 54.7
Duzib132G0772 Durio zibethinus HOM05D000038 ORTHO05D000689 2.8e-07 58.9 67 43.3
Nitab4.5_0000762g0120 Nicotiana tabacum HOM05D000013 ORTHO05D000689 2.8e-07 58.9 69 46.4
PGSC0003DMG400008523 Solanum tuberosum HOM05D000013 ORTHO05D000011 2.8e-07 58.9 76 38.2
CiPaw.04G121500 Carya illinoinensis HOM05D000038 ORTHO05D000689 3.7e-07 58.5 71 50.7
Nitab4.5_0003898g0050 Nicotiana tabacum HOM05D000013 ORTHO05D000689 3.7e-07 58.5 70 45.7
Nitab4.5_0007549g0010 Nicotiana tabacum HOM05D000013 ORTHO05D000011 3.7e-07 58.5 68 47.1
Sc21g0002150 Simmondsia chinensis HOM05D000038 ORTHO05D000689 3.7e-07 58.5 53 50.9
ECA246G2743 Erigeron canadensis HOM05D000038 ORTHO05D000689 4.8e-07 58.2 65 46.2
Prupe.3G225200 Prunus persica HOM05D000013 ORTHO05D000689 4.8e-07 58.2 57 59.6
Haze_13035 Corylus avellana HOM05D000038 ORTHO05D000689 6.3e-07 57.8 75 46.7
Hma1.2p1_0712F.1_g207690 Hydrangea macrophylla HOM05D000013 ORTHO05D000689 6.3e-07 57.8 49 63.3
CSS0028873 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 8.3e-07 57.4 66 42.4
CSS0030882 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 8.3e-07 57.4 66 42.4
Cc05_g05720 Coffea canephora HOM05D000038 ORTHO05D000689 8.3e-07 57.4 68 45.6
MD09G1096200 Malus domestica HOM05D000013 ORTHO05D000689 8.3e-07 57.4 66 48.5
Peaxi162Scf00007g00177 Petunia axillaris HOM05D000013 ORTHO05D000689 8.3e-07 57.4 67 46.3
Prupe.3G224900 Prunus persica HOM05D000013 ORTHO05D000011 8.3e-07 57.4 42 64.3
vmacro09303 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 8.3e-07 57.4 60 46.7
CSS0028698 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.1e-06 57.0 66 42.4
Lj3g0004551 Lotus japonicus HOM05D000013 ORTHO05D000011 1.1e-06 57.0 68 51.5
Psat5g267480 Pisum sativum HOM05D000038 ORTHO05D000689 1.1e-06 57.0 50 60.0
CSS0048940 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.4e-06 56.6 59 52.5
Migut.M00369 Erythranthe guttata HOM05D000038 ORTHO05D000689 1.4e-06 56.6 57 50.9
Gorai.008G151000 Gossypium raimondii HOM05D000038 ORTHO05D000689 1.4e-06 56.6 81 42.0
HanXRQChr15g0479481 Helianthus annuus HOM05D000013 ORTHO05D000011 1.4e-06 56.6 76 40.8
TAR627G0198 Trochodendron aralioides HOM05D000038 ORTHO05D000689 1.4e-06 56.6 57 50.9
Lj1C743T0 Lonicera japonica HOM05D000013 ORTHO05D000689 1.8e-06 56.2 55 54.5
Lj3g0022501 Lotus japonicus HOM05D000038 ORTHO05D000689 1.8e-06 56.2 63 52.4
SalBow1G2813 Salvia bowleyana HOM05D000013 ORTHO05D000689 1.8e-06 56.2 50 58.0
SalBow1G5292 Salvia bowleyana HOM05D000013 ORTHO05D000689 1.8e-06 56.2 50 58.0
Sc12g0002650 Simmondsia chinensis HOM05D000038 ORTHO05D000689 1.8e-06 56.2 57 54.4
PGSC0003DMG400008508 Solanum tuberosum HOM05D000013 ORTHO05D000011 1.8e-06 56.2 63 41.3
vmacro09301 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 1.8e-06 56.2 56 50.0
CSS0022758 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.4e-06 55.8 61 47.5
CSS0025699 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.4e-06 55.8 60 46.7
DCAR_021210 Daucus carota HOM05D000038 ORTHO05D000689 2.4e-06 55.8 60 46.7
DCAR_021211 Daucus carota HOM05D000038 ORTHO05D000689 2.4e-06 55.8 55 49.1
HanXRQChr01g0019941 Helianthus annuus HOM05D000013 ORTHO05D000689 2.4e-06 55.8 70 44.3
Lj3g0027417 Lotus japonicus HOM05D000013 ORTHO05D000011 2.4e-06 55.8 68 51.5
Peaxi162Scf00007g00185 Petunia axillaris HOM05D000038 ORTHO05D000689 2.4e-06 55.8 58 44.8
Rhsim04G0061400 Rhododendron simsii HOM05D000038 ORTHO05D000689 2.4e-06 55.8 60 46.7
Peaxi162Scf00560g00731 Petunia axillaris HOM05D000038 ORTHO05D000689 3.1e-06 55.5 59 45.8
TAR374G0095 Trochodendron aralioides HOM05D000013 ORTHO05D000011 3.1e-06 55.5 64 50.0
DCAR_019201 Daucus carota HOM05D000038 ORTHO05D000689 4.1e-06 55.1 71 38.0
Duzib052G0031 Durio zibethinus HOM05D000038 ORTHO05D000689 4.1e-06 55.1 71 43.7
TAR626G0246 Trochodendron aralioides HOM05D000038 ORTHO05D000689 4.1e-06 55.1 68 47.1
CSS0006040 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.4e-06 54.7 59 50.8
COL.COLO4_04407 Corchorus olitorius HOM05D000013 ORTHO05D000689 5.4e-06 54.7 86 39.5
Peaxi162Scf00560g00740 Petunia axillaris HOM05D000038 ORTHO05D000689 5.4e-06 54.7 59 45.8
CSS0001511 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.0e-06 54.3 59 49.2
CSS0009187 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.0e-06 54.3 60 45.0
Eucgr.K00400 Eucalyptus grandis HOM05D000038 ORTHO05D000689 7.0e-06 54.3 59 50.8
Lsat_1_v5_gn_3_41320 Lactuca sativa HOM05D000038 ORTHO05D000689 7.0e-06 54.3 67 43.3
TAR624G1046 Trochodendron aralioides HOM05D000038 ORTHO05D000689 7.0e-06 54.3 60 48.3
A09p12250 Brassica napus HOM05D000013 ORTHO05D000689 9.1e-06 53.9 87 39.1
CANSAT64G1805 Cannabis sativa HOM05D000013 ORTHO05D000011 9.1e-06 53.9 60 51.7
CAN.G640.28 Capsicum annuum HOM05D000038 ORTHO05D000689 9.1e-06 53.9 57 49.1
DCAR_009706 Daucus carota HOM05D000013 ORTHO05D000689 9.1e-06 53.9 50 50.0
Lj3g0016575 Lotus japonicus HOM05D000013 ORTHO05D000011 9.1e-06 53.9 63 50.8
Nitab4.5_0000297g0310 Nicotiana tabacum HOM05D000013 ORTHO05D000011 9.1e-06 53.9 62 51.6
PGR042G0040 Punica granatum HOM05D000038 ORTHO05D000689 9.1e-06 53.9 75 45.3
Rhsim04G0060500 Rhododendron simsii HOM05D000038 ORTHO05D000689 9.1e-06 53.9 60 46.7
Rhsim04G0061000 Rhododendron simsii HOM05D000038 ORTHO05D000689 9.1e-06 53.9 60 45.0
TAR627G0404 Trochodendron aralioides HOM05D000038 ORTHO05D000689 9.1e-06 53.9 60 48.3


User provided reference genes

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