Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.3e-45 185.3 96 100.0
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.3e-45 185.3 96 100.0
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.3e-45 185.3 96 100.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.9e-45 184.9 96 99.0
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.7e-40 169.1 95 88.4
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.8e-40 168.3 96 88.5
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.7e-40 167.9 96 88.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.9e-40 167.5 96 86.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 4.9e-40 167.5 96 88.5
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.9e-40 167.5 96 88.5
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 6.3e-40 167.2 96 87.5
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 8.3e-40 166.8 96 86.5
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.8e-39 165.6 96 87.5
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.8e-39 165.6 96 85.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.2e-39 164.9 96 85.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.2e-39 164.9 97 84.5
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.4e-39 164.1 96 86.5
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.4e-39 164.1 96 86.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.4e-39 164.1 100 87.0
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 9.2e-39 163.3 96 85.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 9.2e-39 163.3 96 87.5
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 9.2e-39 163.3 96 84.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.2e-39 163.3 98 84.7
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.2e-38 162.9 96 83.3
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.2e-38 162.9 96 83.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.2e-38 162.9 95 86.3
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-38 162.5 96 86.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.6e-38 162.5 96 85.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.6e-38 162.5 99 83.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.0e-38 162.2 96 84.4
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.7e-38 161.8 97 83.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 2.7e-38 161.8 95 84.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.7e-38 161.8 95 84.2
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.7e-38 161.8 96 86.5
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.7e-38 161.8 95 85.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 4.5e-38 161.0 96 83.3
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.5e-38 161.0 96 83.3
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 5.9e-38 160.6 96 86.5
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.9e-38 160.6 97 82.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.9e-38 160.6 95 83.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 5.9e-38 160.6 96 83.3
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 5.9e-38 160.6 99 82.8
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 7.8e-38 160.2 96 81.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.8e-38 160.2 96 83.3
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.0e-37 159.8 97 84.5
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.3e-37 159.5 96 83.3
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.3e-37 159.5 98 81.6
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.3e-37 158.7 97 81.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.3e-37 158.7 97 81.4
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.3e-37 158.7 96 81.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 2.3e-37 158.7 99 81.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 2.3e-37 158.7 98 82.7
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.9e-37 158.3 96 84.4
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.9e-37 158.3 98 81.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.9e-37 158.3 95 82.1
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.9e-37 158.3 97 81.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 2.9e-37 158.3 98 81.6
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.9e-37 157.9 96 80.2
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.9e-37 157.9 96 80.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.9e-37 157.9 96 80.2
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 3.9e-37 157.9 96 80.2
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.9e-37 157.9 96 82.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.0e-37 157.5 97 83.5
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.0e-37 157.5 96 83.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 8.6e-37 156.8 96 80.2
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 8.6e-37 156.8 95 81.1
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.6e-37 156.8 99 83.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.1e-36 156.4 94 81.9
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-36 156.4 96 80.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-36 156.4 96 80.2
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.1e-36 156.4 95 81.1
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.1e-36 156.4 89 84.3
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.1e-36 156.4 96 81.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.5e-36 156.0 99 80.8
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.9e-36 155.6 95 82.1
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.9e-36 155.6 94 83.0
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.9e-36 155.6 94 79.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.5e-36 155.2 96 79.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 3.3e-36 154.8 96 80.2
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 3.3e-36 154.8 99 82.8
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 3.3e-36 154.8 96 78.1
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 4.3e-36 154.5 98 80.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 4.3e-36 154.5 96 82.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 4.3e-36 154.5 93 86.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 5.6e-36 154.1 99 80.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.6e-36 154.1 99 79.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.6e-36 154.1 100 79.0
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.6e-36 154.1 100 79.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.6e-36 154.1 100 79.0
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.6e-36 154.1 100 79.0
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 5.6e-36 154.1 96 81.2
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 7.3e-36 153.7 95 82.1
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.3e-36 153.7 97 82.5
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 9.5e-36 153.3 99 80.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 9.5e-36 153.3 99 80.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 9.5e-36 153.3 99 80.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.2e-35 152.9 97 82.5
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-35 152.9 96 82.3
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-35 152.9 96 82.3
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 2.1e-35 152.1 98 78.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.1e-35 152.1 96 80.2
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.6e-35 151.4 99 80.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 3.6e-35 151.4 89 86.5
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.6e-35 151.4 83 86.7
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 4.7e-35 151.0 92 80.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.1e-35 150.6 99 80.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 8.0e-35 150.2 83 88.0
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-34 149.8 94 78.7
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.0e-34 149.8 94 78.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.4e-34 149.4 97 76.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.4e-34 149.4 84 85.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.4e-34 149.4 97 76.3
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.8e-34 149.1 91 82.4
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.8e-34 149.1 90 82.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.1e-34 148.3 91 82.4
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.2e-34 147.5 93 80.6
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 5.2e-34 147.5 94 76.6
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.8e-34 147.1 83 85.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 6.8e-34 147.1 88 80.7
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.5e-33 146.0 87 81.6
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.5e-33 146.0 95 76.8
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.6e-33 145.2 89 80.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 3.4e-33 144.8 86 81.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 9.8e-33 143.3 98 74.5
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 9.8e-33 143.3 87 80.5
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 9.8e-33 143.3 87 80.5
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.3e-32 142.9 96 75.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.2e-32 142.1 95 75.8
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.9e-32 141.7 96 74.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.4e-31 138.7 85 81.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.4e-31 137.5 96 74.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.3e-29 132.9 83 78.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.7e-29 132.5 83 81.9
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.7e-29 132.5 90 76.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.6e-29 130.2 96 70.8
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 9.5e-28 126.7 95 65.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.4e-25 117.9 69 87.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.4e-25 117.9 95 66.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 4.1e-23 111.3 95 63.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.2e-22 109.8 96 61.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.5e-20 102.1 80 67.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.5e-20 102.1 56 85.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.6e-20 100.9 61 78.7
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.1e-19 99.0 78 69.2
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.6e-19 98.2 61 78.7
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-18 96.7 60 76.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.4e-18 96.3 96 52.1
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.0e-18 94.7 66 74.2
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.5e-17 92.8 89 65.2
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.6e-17 90.5 46 97.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 6.4e-16 87.4 54 74.1
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.4e-15 84.3 69 68.1
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.2e-14 83.2 90 50.0
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-13 79.7 57 66.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.4e-07 59.7 46 63.0


User provided reference genes

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