Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2956 Fragaria x ananassa HOM05D007370 ORTHO05D009394 2.6e-29 131.3 65 100.0
FvH4_4g19730 Fragaria vesca HOM05D007370 ORTHO05D009394 1.3e-20 102.4 65 86.2
FAN12G3716 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.3e-20 102.4 65 86.2
FAN07G1244 Fragaria x ananassa HOM05D007370 ORTHO05D009394 1.4e-19 99.0 65 84.6
RcHm_v2.0_Chr4g0425231 Rosa chinensis HOM05D007370 ORTHO05D009394 2.5e-19 98.2 65 84.6
Haze_01298 Corylus avellana HOM05D007370 ORTHO05D009394 1.6e-15 85.5 65 70.8
MD16G1154200 Malus domestica HOM05D007370 ORTHO05D009394 3.1e-14 81.3 64 70.3
QL06p012270 Quercus lobata HOM05D007370 ORTHO05D009394 4.1e-14 80.9 64 67.2
CiPaw.01G138600 Carya illinoinensis HOM05D007370 ORTHO05D009394 9.0e-14 79.7 60 66.7
Manes.15G004200 Manihot esculenta HOM05D007370 ORTHO05D009394 9.0e-14 79.7 61 67.2
Potri.010G145700 Populus trichocarpa HOM05D007370 ORTHO05D009394 9.0e-14 79.7 61 68.9
Sabra10G0112300 Salix brachista HOM05D007370 ORTHO05D009394 1.5e-13 79.0 61 67.2
Prupe.1G117500 Prunus persica HOM05D007370 ORTHO05D009394 5.9e-13 77.0 61 67.2
Thecc.04G300700 Theobroma cacao HOM05D007370 ORTHO05D009394 5.9e-13 77.0 64 62.5
Atru.chr4.3000 Acer truncatum HOM05D007370 ORTHO05D009394 7.6e-13 76.6 61 62.3
TAR362G0601 Trochodendron aralioides HOM05D007370 ORTHO05D009394 7.6e-13 76.6 60 65.0
EL10Ac3g05507 Beta vulgaris HOM05D007370 ORTHO05D009394 1.0e-12 76.3 61 67.2
AUR62039281 Chenopodium quinoa HOM05D007370 ORTHO05D009394 2.2e-12 75.1 61 67.2
Hund11933 Selenicereus undatus HOM05D007370 ORTHO05D009394 2.9e-12 74.7 65 64.6
Dinv15168 Davidia involucrata HOM05D007370 ORTHO05D009394 3.8e-12 74.3 61 67.2
MBI18_g37561_MAGBIO Magnolia biondii HOM05D007370 ORTHO05D009394 3.8e-12 74.3 61 63.9
AUR62016207 Chenopodium quinoa HOM05D007370 ORTHO05D009394 5.0e-12 73.9 61 65.6
Ca_00981_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 8.4e-12 73.2 61 67.2
Rhsim02G0003800 Rhododendron simsii HOM05D007370 ORTHO05D009394 8.4e-12 73.2 61 65.6
Duzib052G0732 Durio zibethinus HOM05D007370 ORTHO05D009394 1.1e-11 72.8 63 60.3
Sed0008389 Sechium edule HOM05D007370 ORTHO05D009394 1.1e-11 72.8 61 63.9
TPR.G27253 Trifolium pratense HOM05D007370 ORTHO05D009394 1.1e-11 72.8 61 67.2
CSS0048431 Camellia sinensis var. sinensis HOM05D007370 ORTHO05D009394 1.4e-11 72.4 63 58.7
Medtr2g034140 Medicago truncatula HOM05D007370 ORTHO05D009394 1.9e-11 72.0 61 67.2
PGR142G3192 Punica granatum HOM05D007370 ORTHO05D009394 1.9e-11 72.0 61 62.3
Lalb_Chr20g0120861 Lupinus albus HOM05D007370 ORTHO05D009394 2.5e-11 71.6 61 65.6
vmacro15182 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 2.5e-11 71.6 62 66.1
CAN.G484.61 Capsicum annuum HOM05D007370 ORTHO05D009394 3.2e-11 71.2 61 60.7
CsaV3_6G022350 Cucumis sativus L. HOM05D007370 ORTHO05D009394 3.2e-11 71.2 61 62.3
Sopen12g033950 Solanum pennellii HOM05D007370 ORTHO05D009394 3.2e-11 71.2 61 60.7
PGSC0003DMG400004697 Solanum tuberosum HOM05D007370 ORTHO05D009394 3.2e-11 71.2 61 60.7
DCAR_002511 Daucus carota HOM05D007370 ORTHO05D009394 4.2e-11 70.9 63 61.9
ClCG06G004600 Citrullus lanatus HOM05D007370 ORTHO05D009394 5.5e-11 70.5 61 62.3
Psat1g161680 Pisum sativum HOM05D007370 ORTHO05D009394 5.5e-11 70.5 61 65.6
MELO3C021271.2 Cucumis melo HOM05D007370 ORTHO05D009394 7.2e-11 70.1 61 62.3
Lj6A691G74 Lonicera japonica HOM05D007370 ORTHO05D009394 7.2e-11 70.1 74 55.4
Peaxi162Scf01160g00001 Petunia axillaris HOM05D007370 ORTHO05D009394 7.2e-11 70.1 61 59.0
Glyma.09G035700 Glycine max HOM05D007370 ORTHO05D009394 9.3e-11 69.7 61 63.9
Sc13g0006460 Simmondsia chinensis HOM05D007370 ORTHO05D009394 1.2e-10 69.3 63 63.5
Peaxi162Scf00120g00023 Petunia axillaris HOM05D007370 ORTHO05D009394 1.6e-10 68.9 61 57.4
arahy.Tifrunner.gnm1.ann1.CV4FMG Arachis hypogaea HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 62.3
arahy.Tifrunner.gnm1.ann1.HMTG6S Arachis hypogaea HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 62.3
arahy.Tifrunner.gnm1.ann1.VHF2FI Arachis hypogaea HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 62.3
Gohir.A01G034400 Gossypium hirsutum HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 60.7
Gohir.D01G023538 Gossypium hirsutum HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 60.7
Gorai.002G030100 Gossypium raimondii HOM05D007370 ORTHO05D009394 2.1e-10 68.6 61 60.7
Cpa.g.sc9.57 Carica papaya HOM05D007370 ORTHO05D009394 2.7e-10 68.2 60 60.0
Lj6g0027049 Lotus japonicus HOM05D007370 ORTHO05D009394 2.7e-10 68.2 60 65.0
Migut.G00060 Erythranthe guttata HOM05D007370 ORTHO05D009394 3.5e-10 67.8 63 57.1
VMungo0540G1057 Vigna mungo HOM05D007370 ORTHO05D009394 3.5e-10 67.8 61 63.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 7.9e-10 66.6 61 60.7
Cc03_g00820 Coffea canephora HOM05D007370 ORTHO05D009394 7.9e-10 66.6 61 60.7
Eucgr.A00294 Eucalyptus grandis HOM05D007370 ORTHO05D009394 7.9e-10 66.6 60 60.0
Phvul.006G118000 Phaseolus vulgaris HOM05D007370 ORTHO05D009394 7.9e-10 66.6 61 62.3
Solyc12g099270.2 Solanum lycopersicum HOM05D007370 ORTHO05D009394 1.0e-09 66.2 61 59.0
ATR0693G166 Amborella trichopoda HOM05D007370 ORTHO05D009394 2.3e-09 65.1 60 58.3
Ah.04g156700 Amaranthus hybridus HOM05D007370 ORTHO05D009394 3.9e-09 64.3 59 59.3
arahy.Tifrunner.gnm1.ann1.DXY8A4 Arachis hypogaea HOM05D007370 ORTHO05D009394 3.9e-09 64.3 57 64.9
COL.COLO4_34615 Corchorus olitorius HOM05D007370 ORTHO05D009394 1.1e-08 62.8 61 55.7
Zm00001eb356360 Zea mays HOM05D007370 ORTHO05D009394 1.9e-08 62.0 61 54.1
unitig_37.g12412 Utricularia gibba HOM05D007370 ORTHO05D009394 2.5e-08 61.6 61 52.5
ECA248G2723 Erigeron canadensis HOM05D007370 ORTHO05D009394 3.3e-08 61.2 61 55.7
CDE08G1199 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 7.4e-08 60.1 61 52.5
Os05g0157300 Oryza sativa ssp. japonica HOM05D007370 ORTHO05D009394 7.4e-08 60.1 60 55.0
Nn6g33643 Nelumbo nucifera HOM05D007370 ORTHO05D009394 9.7e-08 59.7 54 59.3
SalBow8G4515 Salvia bowleyana HOM05D007370 ORTHO05D009394 9.7e-08 59.7 55 58.2
TWI09G1560 Tripterygium wilfordii HOM05D007370 ORTHO05D009394 9.7e-08 59.7 64 54.7
SEGI_11896 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 1.6e-07 58.9 62 50.0
Nitab4.5_0002294g0020 Nicotiana tabacum HOM05D007370 ORTHO05D009394 2.2e-07 58.5 63 52.4
Nitab4.5_0002150g0160 Nicotiana tabacum HOM05D007370 ORTHO05D009394 3.7e-07 57.8 54 57.4
HanXRQChr01g0030981 Helianthus annuus HOM05D007370 ORTHO05D009394 9.0e-06 53.1 61 49.2
SEGI_23244 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 9.0e-06 53.1 62 46.8


User provided reference genes

Program Settings