Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 5.3e-99 364.4 188 100.0
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 2.8e-92 342.0 189 95.2
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.5e-90 336.3 188 92.0
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.6e-87 325.1 188 89.9
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.4e-86 323.2 190 88.9
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 2.0e-85 319.3 188 87.2
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 2.5e-32 142.9 192 51.6
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 6.4e-28 128.3 199 48.2
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 4.6e-26 122.1 191 48.2
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 5.6e-24 115.2 161 53.4
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.3e-20 104.0 119 54.6
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 3.8e-20 102.4 151 43.7
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 1.1e-19 100.9 162 45.1
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 4.2e-19 99.0 125 48.0
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 1.2e-18 97.4 165 47.3
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 1.6e-18 97.1 116 54.3
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 7.8e-18 94.7 135 51.1
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 1.0e-17 94.4 171 42.7
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 1.0e-17 94.4 152 40.1
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 1.3e-17 94.0 114 50.0
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 1.3e-17 94.0 125 52.0
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 1.7e-17 93.6 121 49.6
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 1.7e-17 93.6 156 46.2
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 3.0e-17 92.8 138 47.8
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 3.9e-17 92.4 165 45.5
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 5.1e-17 92.0 165 43.0
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 6.6e-17 91.7 133 44.4
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 1.5e-16 90.5 122 51.6
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 1.5e-16 90.5 156 42.3
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 3.3e-16 89.4 124 49.2
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 4.3e-16 89.0 116 50.9
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 4.3e-16 89.0 113 52.2
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 5.6e-16 88.6 118 50.0
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 5.6e-16 88.6 124 51.6
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 1.3e-15 87.4 135 49.6
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.3e-15 87.4 113 49.6
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.6e-15 87.0 111 50.5
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-15 86.7 110 51.8
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.1e-15 86.7 110 51.8
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.1e-15 86.7 110 51.8
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 2.8e-15 86.3 113 49.6
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 2.8e-15 86.3 113 49.6
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 3.6e-15 85.9 113 49.6
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 3.6e-15 85.9 165 42.4
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 8.1e-15 84.7 159 39.6
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 3.1e-14 82.8 105 46.7
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 4.0e-14 82.4 95 61.1
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 5.3e-14 82.0 126 43.7
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 6.9e-14 81.6 122 49.2
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 1.2e-13 80.9 132 40.9
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 1.2e-13 80.9 130 44.6
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 2.0e-13 80.1 100 54.0
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 2.0e-13 80.1 65 66.2
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 3.4e-13 79.3 143 43.4
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 5.8e-13 78.6 123 41.5
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 7.6e-13 78.2 114 50.0
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 7.6e-13 78.2 134 47.8
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 9.9e-13 77.8 114 47.4
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 1.3e-12 77.4 134 44.8
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 2.2e-12 76.6 126 42.9
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 2.2e-12 76.6 70 61.4
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 3.8e-12 75.9 120 46.7
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 4.9e-12 75.5 127 44.9
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 1.1e-11 74.3 122 45.9
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 4.2e-11 72.4 138 43.5
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 7.1e-11 71.6 122 43.4
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 7.1e-11 71.6 151 37.1
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 7.1e-11 71.6 124 41.9
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 9.3e-11 71.2 95 53.7
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 1.2e-10 70.9 119 39.5
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 1.2e-10 70.9 119 39.5
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 1.2e-10 70.9 127 40.9
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 1.2e-10 70.9 103 46.6
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 1.2e-10 70.9 154 39.0
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 1.2e-10 70.9 134 38.1
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 1.6e-10 70.5 104 43.3
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 2.1e-10 70.1 116 39.7
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 4.6e-10 68.9 109 47.7
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 4.6e-10 68.9 117 41.0
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 7.9e-10 68.2 190 31.6
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.0e-09 67.8 130 38.5
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 1.3e-09 67.4 114 43.9
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 3.0e-09 66.2 119 42.9
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 8.7e-09 64.7 133 36.8
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 8.7e-09 64.7 109 39.4
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 1.1e-08 64.3 70 55.7
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.5e-08 63.9 105 41.9
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 1.5e-08 63.9 103 46.6
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 1.9e-08 63.5 76 50.0
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 1.9e-08 63.5 107 39.3
Sed0023819 Sechium edule HOM05D007558 ORTHO05D009245 3.3e-08 62.8 89 46.1
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 3.3e-08 62.8 109 40.4
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 7.4e-08 61.6 158 31.0
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.6e-08 61.2 122 39.3
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 1.3e-07 60.8 140 37.9
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 1.3e-07 60.8 84 44.0
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 1.6e-07 60.5 127 40.2
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 1.6e-07 60.5 127 37.0
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 2.8e-07 59.7 94 41.5
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.7e-07 59.3 124 41.9
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.1e-06 57.8 71 47.9
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 1.4e-06 57.4 160 33.1
Ah.02g129970 Amaranthus hybridus HOM05D023191 ORTHO05D009245 1.8e-06 57.0 204 30.9
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 1.8e-06 57.0 120 35.8
AUR62005388 Chenopodium quinoa HOM05D023191 ORTHO05D009245 1.8e-06 57.0 189 29.6
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 3.1e-06 56.2 61 57.4
SalBow8G4409 Salvia bowleyana HOM05D007558 ORTHO05D009245 4.0e-06 55.8 124 34.7
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 5.3e-06 55.5 93 37.6
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 5.3e-06 55.5 118 35.6
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 5.3e-06 55.5 93 37.6
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 5.3e-06 55.5 93 37.6
Nitab4.5_0005678g0020 Nicotiana tabacum HOM05D020724 ORTHO05D025910 5.3e-06 55.5 140 39.3


User provided reference genes

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