Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1320.4 656 100.0
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 0.0e+00 1222.2 656 93.9
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1169.5 656 90.7
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1168.7 656 90.9
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1159.8 680 87.6
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 0.0e+00 1078.9 664 83.1
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.5e-270 936.0 697 69.4
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 3.7e-264 914.8 698 68.8
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 5.3e-263 911.0 712 67.7
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 3.7e-240 835.1 708 62.9
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 8.2e-240 833.9 722 63.2
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 4.1e-239 831.6 722 63.0
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.7e-235 818.9 719 61.5
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 2.6e-233 812.4 669 63.7
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 3.4e-233 812.0 683 63.1
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 7.0e-231 804.3 690 62.6
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 1.0e-229 800.4 688 61.2
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.3e-229 800.0 683 61.5
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 2.3e-229 799.3 710 61.4
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.0e-226 790.4 691 61.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 5.2e-226 788.1 690 62.0
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 5.2e-226 788.1 691 61.6
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 1.1e-223 780.4 683 60.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 1.6e-222 776.5 704 59.1
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.8e-221 771.9 681 59.3
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.1e-220 770.4 680 59.0
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-220 770.0 681 59.3
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.2e-219 766.9 680 58.8
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.8e-219 765.8 684 60.1
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.8e-219 765.8 703 58.0
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.4e-218 763.5 685 60.1
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.5e-217 760.0 706 57.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 6.4e-216 754.6 757 54.4
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 7.0e-215 751.1 701 57.9
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.2e-214 750.4 721 55.9
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 1.6e-214 750.0 693 58.7
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 3.5e-214 748.8 672 58.9
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 4.6e-214 748.4 698 57.0
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 6.0e-214 748.0 658 59.3
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 8.6e-213 744.2 671 57.7
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.1e-212 743.8 724 55.5
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.5e-212 743.4 698 57.2
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.5e-212 742.7 664 58.4
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 3.3e-212 742.3 666 58.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 3.3e-212 742.3 674 58.3
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 5.6e-212 741.5 695 57.7
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 7.3e-212 741.1 701 56.3
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 3.6e-211 738.8 713 56.8
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.1e-210 737.3 664 58.0
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 6.8e-210 734.6 697 56.8
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 4.4e-209 731.9 665 57.6
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 7.5e-209 731.1 669 57.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 6.4e-208 728.0 666 56.8
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.9e-207 726.5 663 56.9
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 2.4e-207 726.1 696 56.3
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.4e-207 726.1 672 57.0
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.4e-207 724.9 668 56.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 1.2e-206 723.8 705 56.7
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.6e-206 723.4 750 55.6
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 7.8e-206 721.1 667 57.9
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 1.0e-205 720.7 602 60.6
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.1e-204 717.2 654 59.3
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 9.5e-204 714.1 714 55.3
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 3.1e-202 709.1 730 54.0
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.1e-202 709.1 693 56.4
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-201 707.2 688 56.7
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.5e-201 706.8 703 54.5
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 9.9e-201 704.1 702 55.6
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 3.7e-200 702.2 694 55.6
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 6.4e-200 701.4 657 56.2
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 8.3e-200 701.0 654 55.8
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.9e-199 699.9 719 53.5
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 7.1e-199 698.0 703 53.9
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.9e-196 689.9 691 54.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.2e-191 672.5 683 53.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.2e-187 660.6 668 52.7
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.7e-187 658.7 698 54.6
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 6.2e-187 658.3 580 60.0
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.8e-184 649.0 682 53.5
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.0e-181 641.0 676 51.9
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.9e-180 636.7 783 47.9
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 5.6e-180 635.2 658 52.6
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 4.0e-178 629.0 692 50.6
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 6.7e-165 585.1 676 50.4
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 6.2e-163 578.6 451 65.2
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.3e-157 560.8 476 63.0
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 8.2e-155 551.6 589 52.6
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.3e-152 544.3 632 49.2
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.7e-152 543.9 474 62.2
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.2e-151 539.3 712 44.7
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 9.4e-151 538.1 669 45.7
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 4.6e-150 535.8 433 65.4
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.7e-128 464.2 282 79.8
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 4.5e-121 439.5 500 48.2
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.0e-120 438.3 662 42.9
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.7e-118 430.3 530 45.5
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.4e-106 389.4 350 59.1
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 5.2e-101 372.9 488 45.3
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.0e-100 370.9 255 74.9
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.8e-94 350.5 263 68.4
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.9e-91 340.5 597 38.7
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 6.4e-91 339.3 175 94.9
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 2.1e-89 334.3 645 34.1
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.5e-87 328.2 195 80.5
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.9e-87 327.8 263 68.4
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 5.6e-87 326.2 353 49.6
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 6.4e-83 312.8 442 44.1
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 7.1e-82 309.3 187 78.6
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 6.6e-80 302.8 390 43.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.7e-73 280.8 255 59.2
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 6.0e-73 279.6 829 28.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.0e-72 277.3 255 58.8
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 2.4e-69 267.7 187 73.8
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-68 265.0 183 71.6
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-67 261.9 280 55.0
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 2.3e-64 251.1 150 78.7
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.5e-63 248.4 135 90.4
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.9e-59 233.4 363 38.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 4.8e-54 216.9 130 78.5
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 2.0e-44 184.9 498 30.9
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.7e-38 164.1 194 48.5
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.8e-29 135.2 180 43.9
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 3.6e-25 120.9 214 37.9
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 8.8e-24 116.3 152 50.0
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.1e-23 115.9 118 51.7
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 7.4e-23 113.2 207 35.3
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 2.2e-22 111.7 208 36.5
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 1.2e-20 105.9 118 45.8
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.2e-19 101.7 126 46.8
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 3.0e-16 91.3 81 51.9
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.1e-15 89.4 118 42.4
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 3.3e-15 87.8 53 84.9
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 2.7e-12 78.2 52 71.2
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 8.8e-08 63.2 53 56.6
MCO01G357 Micromonas commoda HOM05D001481 ORTHO05D001865 3.7e-06 57.8 210 26.7
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.3e-06 57.0 200 28.5


User provided reference genes

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