Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-77 291.6 147 100.0
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-73 278.9 149 96.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 4.5e-69 264.6 146 92.5
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.5e-66 255.0 141 94.3
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.9e-61 237.7 131 93.9
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 6.5e-52 207.6 149 74.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.1e-35 153.7 145 60.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 9.4e-27 124.0 151 53.0
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.7e-21 105.9 153 44.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.7e-21 105.9 152 47.4
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 3.5e-21 105.5 93 60.2
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.5e-21 105.5 154 46.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.5e-21 105.5 153 43.1
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 4.5e-21 105.1 150 43.3
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.7e-21 104.4 97 56.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-20 104.0 145 44.8
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.0e-20 104.0 86 61.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.9e-20 102.4 125 47.2
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 3.8e-20 102.1 133 46.6
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 6.6e-20 101.3 149 45.6
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.6e-20 101.3 110 54.5
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 8.6e-20 100.9 86 60.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.5e-19 100.1 150 42.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.9e-19 99.8 143 45.5
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.9e-19 99.8 125 48.0
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 7.2e-19 97.8 146 43.2
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 9.5e-19 97.4 105 53.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.2e-18 97.1 151 42.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.6e-18 96.7 148 44.6
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.1e-18 96.3 95 55.8
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 2.8e-18 95.9 122 45.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.6e-18 95.5 89 59.6
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.7e-18 95.1 77 64.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.7e-18 95.1 77 64.9
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 6.1e-18 94.7 71 69.0
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 8.0e-18 94.4 84 59.5
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.8e-17 93.2 83 59.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.3e-17 92.8 155 43.2
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.0e-17 92.4 81 59.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.0e-17 92.4 95 55.8
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.0e-17 92.0 141 42.6
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 5.2e-17 91.7 87 57.5
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 6.8e-17 91.3 81 59.3
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.2e-16 90.5 80 60.0
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.2e-16 90.5 141 41.8
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.0e-16 89.7 91 56.0
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 2.6e-16 89.4 150 41.3
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.6e-16 89.4 78 59.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.4e-16 88.6 119 46.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.5e-16 87.8 78 60.3
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.8e-15 85.9 122 45.1
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.9e-15 85.1 119 43.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.9e-15 85.1 78 53.8
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 4.9e-15 85.1 127 39.4
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 4.9e-15 85.1 89 50.6
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.1e-14 84.0 77 57.1
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.8e-14 83.2 93 52.7
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 3.1e-14 82.4 81 54.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.1e-14 82.4 103 49.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 5.4e-14 81.6 122 41.8
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.4e-14 81.6 106 45.3
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 7.0e-14 81.3 81 55.6
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 7.0e-14 81.3 102 47.1
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 9.2e-14 80.9 77 58.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.2e-13 80.5 148 41.2
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.6e-13 80.1 83 49.4
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.7e-13 79.3 81 51.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.5e-13 78.6 77 57.1
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.0e-12 77.4 142 40.8
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-12 77.4 141 35.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.3e-12 76.3 82 48.8
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.9e-12 75.9 98 48.0
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.9e-12 75.9 77 54.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 3.8e-12 75.5 136 39.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 6.6e-12 74.7 71 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.5e-11 72.8 100 39.0
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 5.6e-11 71.6 77 50.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.8e-10 69.3 86 48.8
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.8e-09 66.6 45 66.7
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.3e-09 66.2 94 44.7
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 5.2e-09 65.1 78 48.7
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.0e-08 63.2 130 32.3
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.0e-08 63.2 134 31.3
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.0e-08 63.2 94 37.2
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-08 62.8 130 32.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 9.8e-08 60.8 39 64.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 4.1e-06 55.5 66 43.9
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 7.0e-06 54.7 49 44.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.2e-06 54.3 59 42.4
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 9.2e-06 54.3 85 38.8


User provided reference genes

Program Settings