Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 2.9e-79 298.9 202 100.0
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.9e-79 298.9 202 100.0
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 6.6e-79 297.7 202 99.5
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.6e-69 266.5 200 94.5
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.1e-69 266.2 202 93.6
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 2.9e-66 255.8 204 89.2
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 7.6e-51 204.5 206 79.6
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 2.4e-49 199.5 206 79.1
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 3.9e-39 165.6 206 56.8
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 6.6e-39 164.9 191 54.5
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 2.2e-34 149.8 201 52.2
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 3.2e-33 146.0 202 53.0
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 2.7e-32 142.9 211 46.0
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 3.5e-32 142.5 198 66.2
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 6.0e-32 141.7 204 55.4
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 7.8e-32 141.4 202 59.4
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 1.0e-31 141.0 203 46.8
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 3.0e-31 139.4 198 65.2
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 1.1e-30 137.5 194 47.9
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 1.5e-30 137.1 210 44.8
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.6e-29 133.7 210 43.8
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 2.8e-29 132.9 198 46.5
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 4.8e-29 132.1 210 43.3
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 1.1e-28 131.0 203 51.2
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 2.4e-28 129.8 207 43.5
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 5.3e-28 128.6 203 46.8
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 2.6e-27 126.3 204 55.4
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 2.6e-27 126.3 203 45.8
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 4.5e-27 125.6 208 43.8
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 4.5e-27 125.6 212 43.9
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 1.3e-26 124.0 202 54.0
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 1.7e-26 123.6 210 41.4
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 2.2e-26 123.2 213 45.1
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 3.8e-26 122.5 203 43.3
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 6.4e-26 121.7 211 44.1
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 3.2e-25 119.4 208 62.0
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 4.2e-25 119.0 202 47.0
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 4.2e-25 119.0 199 50.3
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 7.9e-24 114.8 195 44.6
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 3.9e-23 112.5 206 43.2
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 5.1e-23 112.1 151 59.6
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 1.1e-22 110.9 212 46.7
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 2.5e-22 109.8 192 45.3
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 3.3e-22 109.4 205 35.6
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 5.6e-22 108.6 155 65.8
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 9.6e-22 107.8 205 41.0
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 9.6e-22 107.8 205 41.0
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.3e-21 107.5 204 43.1
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 1.6e-21 107.1 202 43.1
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 1.6e-21 107.1 205 37.1
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 2.8e-21 106.3 207 43.5
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.8e-21 106.3 196 38.3
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 8.1e-21 104.8 202 43.6
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 8.1e-21 104.8 203 36.0
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 1.4e-20 104.0 211 50.2
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 2.4e-20 103.2 210 50.0
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 2.4e-20 103.2 204 36.8
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 4.0e-20 102.4 72 68.1
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 5.3e-20 102.1 76 69.7
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 9.0e-20 101.3 203 38.4
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 9.0e-20 101.3 207 37.7
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 1.5e-19 100.5 208 42.8
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.5e-19 100.5 186 54.8
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 1.5e-19 100.5 191 47.6
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 1.5e-19 100.5 207 42.0
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 2.6e-19 99.8 207 42.0
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 2.6e-19 99.8 210 44.3
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 3.4e-19 99.4 150 60.7
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 4.5e-19 99.0 174 43.1
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 4.5e-19 99.0 203 48.3
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 2.2e-18 96.7 210 45.7
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 4.9e-18 95.5 76 64.5
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 3.2e-17 92.8 204 39.7
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 5.5e-17 92.0 73 61.6
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 7.1e-17 91.7 219 40.6
Dinv29715 Davidia involucrata HOM05D007152 ORTHO05D008912 1.2e-16 90.9 162 64.2
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 2.1e-16 90.1 155 48.4
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 2.1e-16 90.1 161 43.5
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 2.7e-16 89.7 204 39.7
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 2.7e-16 89.7 204 39.7
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 1.0e-15 87.8 62 69.4
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.0e-15 87.8 73 54.8
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 3.0e-15 86.3 149 47.0
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 6.7e-15 85.1 204 50.0
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 6.7e-15 85.1 71 60.6
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 8.7e-15 84.7 76 59.2
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 1.1e-14 84.3 203 38.9
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 1.5e-14 84.0 194 40.7
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 2.5e-14 83.2 210 42.9
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 1.3e-13 80.9 161 51.6
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 6.2e-13 78.6 73 53.4
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 8.2e-13 78.2 49 73.5
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 1.1e-12 77.8 66 59.1
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 1.4e-12 77.4 71 57.7
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 1.8e-12 77.0 60 65.0
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 6.9e-12 75.1 151 61.6
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 2.0e-11 73.6 203 36.9
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 3.8e-10 69.3 198 31.3
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 6.5e-10 68.6 201 44.8
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 8.4e-10 68.2 203 33.0
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 1.4e-09 67.4 64 54.7
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 7.1e-09 65.1 155 38.1
ECA240G1188 Erigeron canadensis HOM05D007152 ORTHO05D008912 2.1e-08 63.5 46 60.9
ATR0693G346 Amborella trichopoda HOM05D007152 ORTHO05D008912 5.1e-07 58.9 203 30.5
CDE02G4694 Ceratophyllum demersum HOM05D007152 ORTHO05D008912 9.7e-06 54.7 161 36.6


User provided reference genes

Program Settings