Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 3.7e-147 525.0 296 100.0
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 4.5e-145 518.1 296 99.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.0e-141 506.9 297 97.0
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.1e-93 347.4 301 74.4
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.3e-86 323.9 299 66.2
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.8e-85 320.1 300 65.7
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 4.5e-60 235.7 290 53.4
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 1.4e-58 230.7 299 53.2
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 6.7e-56 221.9 317 48.6
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 8.2e-54 214.9 309 46.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 3.1e-53 213.0 309 46.9
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 3.4e-52 209.5 195 63.1
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 3.4e-52 209.5 290 53.4
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 4.5e-52 209.1 262 48.1
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 7.7e-52 208.4 292 52.1
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.4e-50 204.1 315 43.2
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.9e-50 203.8 304 44.1
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 9.4e-50 201.4 302 45.4
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 9.4e-50 201.4 291 52.6
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.2e-49 201.1 301 47.2
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.6e-49 199.5 281 49.5
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.0e-48 198.0 258 55.0
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.0e-48 198.0 295 44.1
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.8e-48 197.2 296 51.7
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 3.0e-48 196.4 304 45.1
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 5.1e-48 195.7 318 43.1
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 5.1e-48 195.7 299 44.8
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.1e-47 194.5 284 47.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.0e-47 193.7 304 45.1
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 4.4e-47 192.6 174 64.4
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 9.7e-47 191.4 300 51.7
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 1.7e-46 190.7 192 54.7
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 4.8e-46 189.1 301 42.9
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.0e-44 183.7 296 45.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 1.7e-43 180.6 321 43.3
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.7e-41 173.3 301 41.2
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 4.7e-41 172.6 308 49.4
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 6.1e-41 172.2 297 39.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.0e-40 169.9 264 42.8
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.1e-39 167.9 264 43.6
RcHm_v2.0_Chr4g0396101 Rosa chinensis HOM05D004244 ORTHO05D004964 2.6e-39 166.8 129 87.6
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.7e-38 162.9 266 45.1
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.8e-38 162.5 206 48.5
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.8e-37 160.6 196 49.0
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 5.3e-37 159.1 296 42.6
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 2.0e-36 157.1 198 49.5
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 7.7e-36 155.2 312 37.5
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.3e-35 154.5 353 39.9
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 1.7e-35 154.1 304 47.7
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.7e-35 154.1 196 46.9
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 5.0e-35 152.5 212 43.4
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.1e-34 151.4 196 49.5
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.5e-34 151.0 176 55.1
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 3.2e-34 149.8 185 48.1
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 9.4e-34 148.3 308 38.6
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.2e-33 147.9 260 38.1
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.2e-33 147.9 319 36.7
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 4.7e-33 146.0 194 45.4
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.0e-32 144.8 256 40.2
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.0e-32 144.8 262 41.2
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.8e-32 144.1 258 41.5
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.6e-31 140.2 283 36.4
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 7.5e-31 138.7 206 42.7
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 7.5e-31 138.7 324 41.4
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.7e-30 137.5 296 37.8
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.7e-30 137.5 296 37.8
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 6.3e-30 135.6 218 42.7
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 3.1e-29 133.3 274 36.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.1e-29 133.3 215 41.9
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 5.3e-29 132.5 288 38.2
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 9.1e-29 131.7 189 46.0
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 9.1e-29 131.7 269 38.3
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.2e-28 131.3 318 34.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.2e-28 131.3 183 44.3
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 1.6e-28 131.0 176 44.3
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.6e-28 131.0 286 37.8
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.0e-28 130.6 191 40.8
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 2.0e-28 130.6 286 37.1
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.7e-28 128.6 317 35.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.3e-27 127.9 208 40.9
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 5.0e-27 125.9 286 36.0
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 6.5e-27 125.6 219 41.1
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.5e-27 125.2 217 41.5
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 8.5e-27 125.2 217 41.5
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 4.2e-26 122.9 191 39.8
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 9.4e-26 121.7 216 38.9
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.6e-25 120.9 212 39.2
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 2.7e-25 120.2 195 42.6
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 6.1e-25 119.0 202 41.6
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 3.0e-24 116.7 265 33.6
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 4.0e-24 116.3 181 42.0
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 8.8e-24 115.2 310 33.5
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.2e-23 114.8 226 37.6
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 3.4e-23 113.2 274 39.8
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 5.7e-23 112.5 184 39.1
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 5.7e-23 112.5 215 37.7
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 2.8e-22 110.2 178 42.7
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 4.8e-22 109.4 299 33.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 4.8e-22 109.4 184 39.1
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 4.8e-22 109.4 206 37.4
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 8.3e-22 108.6 189 40.2
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.3e-22 108.6 183 43.2
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 1.1e-21 108.2 184 39.7
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 5.4e-21 105.9 186 38.2
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 7.0e-21 105.5 218 35.3
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.0e-20 104.0 185 37.3
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 2.7e-20 103.6 179 40.2
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 3.5e-20 103.2 210 35.2
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.5e-20 102.8 151 45.0
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.5e-20 102.8 177 40.1
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 5.9e-20 102.4 151 45.0
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.7e-19 100.9 208 36.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.9e-19 100.1 149 42.3
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.0e-19 99.4 142 43.7
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 8.6e-19 98.6 180 38.3
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 8.6e-19 98.6 185 36.2
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.1e-18 98.2 314 31.8
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-18 97.8 193 36.3
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.9e-18 97.4 194 38.7
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 3.2e-18 96.7 174 37.9
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.2e-18 96.3 187 39.6
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 5.5e-18 95.9 168 40.5
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 5.5e-18 95.9 168 41.7
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 2.8e-17 93.6 183 39.3
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 6.1e-17 92.4 179 39.1
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 6.1e-17 92.4 301 37.5
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.4e-16 91.3 179 41.9
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.4e-16 91.3 145 39.3
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.8e-16 90.9 184 36.4
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 1.8e-16 90.9 63 73.0
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.3e-16 90.5 179 39.7
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 4.0e-16 89.7 147 38.8
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 5.2e-16 89.4 173 39.3
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 5.2e-16 89.4 173 38.2
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 5.2e-16 89.4 193 36.8
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 8.8e-16 88.6 173 39.3
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.5e-15 87.8 173 37.6
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.6e-15 87.0 188 37.8
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.4e-15 86.7 193 33.7
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 4.4e-15 86.3 201 35.8
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 5.7e-15 85.9 193 36.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.7e-14 84.3 173 35.3
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 6.3e-14 82.4 189 36.5
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 8.3e-14 82.0 180 38.9
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 8.3e-14 82.0 189 38.1
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 8.3e-14 82.0 189 38.1
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.8e-13 80.9 188 36.7
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 4.1e-13 79.7 163 38.7
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 5.9e-12 75.9 146 40.4
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 2.3e-11 73.9 216 31.5
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.0e-11 72.8 143 35.0
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.1e-10 71.6 180 31.1
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.5e-10 70.5 164 34.1
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 2.3e-08 63.9 115 35.7
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 4.4e-07 59.7 218 27.1
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 4.4e-07 59.7 252 27.0
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.7e-06 57.8 129 34.1


User provided reference genes

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