Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.0e-66 255.4 162 100.0
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.1e-65 253.4 162 99.4
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.1e-65 253.4 162 99.4
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.5e-49 199.9 162 85.8
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 6.3e-48 194.5 162 82.1
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.1e-44 183.7 162 82.1
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 4.1e-39 165.2 168 66.1
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 5.0e-37 158.3 165 55.2
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 2.1e-35 152.9 167 55.1
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 3.6e-35 152.1 162 53.7
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 4.7e-35 151.8 162 52.5
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.0e-34 150.6 167 60.5
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 2.3e-34 149.4 167 59.3
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.9e-34 148.7 163 59.5
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 8.8e-34 147.5 163 52.8
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.6e-33 146.0 163 58.9
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.3e-33 145.6 168 61.3
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 3.3e-33 145.6 169 53.3
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 4.4e-33 145.2 163 51.5
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 7.4e-33 144.4 163 54.6
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 9.7e-33 144.1 166 62.0
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.2e-32 142.9 167 53.3
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 2.8e-32 142.5 163 50.9
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.8e-32 141.7 196 52.6
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 6.3e-32 141.4 162 50.0
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 6.3e-32 141.4 166 57.8
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.8e-31 139.8 163 50.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.4e-31 139.4 166 57.8
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 3.1e-31 139.0 166 52.4
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 4.1e-31 138.7 166 52.4
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 4.1e-31 138.7 166 62.7
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 9.1e-31 137.5 166 51.8
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 9.1e-31 137.5 165 53.9
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.6e-30 136.7 166 51.2
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.6e-30 136.7 147 53.7
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.6e-30 136.7 168 58.3
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.6e-30 136.7 162 54.3
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 1.6e-30 136.7 164 49.4
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-30 136.3 165 50.3
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-30 136.3 165 50.3
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.0e-30 136.3 165 50.3
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 2.6e-30 136.0 168 49.4
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.5e-30 135.2 166 50.6
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 5.9e-30 134.8 166 51.2
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 7.7e-30 134.4 166 54.2
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.0e-29 134.0 166 56.6
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.3e-29 133.7 166 66.9
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-29 133.3 166 51.8
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.7e-29 133.3 166 50.6
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.9e-29 132.5 168 58.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 2.9e-29 132.5 168 61.9
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 3.8e-29 132.1 166 51.8
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 3.8e-29 132.1 167 49.7
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 5.0e-29 131.7 167 50.9
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 5.0e-29 131.7 162 48.1
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.5e-29 131.3 168 56.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.5e-29 131.3 166 53.6
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.5e-29 131.3 166 54.2
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 6.5e-29 131.3 168 47.6
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 8.5e-29 131.0 167 49.1
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 8.5e-29 131.0 160 56.2
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 8.5e-29 131.0 168 50.0
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 1.5e-28 130.2 167 49.1
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.9e-28 129.8 144 61.8
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 2.5e-28 129.4 159 60.4
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 4.2e-28 128.6 167 50.9
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.5e-28 128.3 168 49.4
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 9.4e-28 127.5 154 55.8
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 9.4e-28 127.5 158 60.8
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.7e-27 125.9 167 49.1
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.7e-27 125.9 164 58.5
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 3.6e-27 125.6 152 59.2
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 3.6e-27 125.6 165 46.7
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 8.0e-27 124.4 166 47.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.0e-26 124.0 157 50.3
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 6.7e-26 121.3 143 49.0
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 8.8e-26 120.9 145 48.3
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-25 120.6 164 47.0
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.1e-25 120.6 154 50.0
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-25 119.8 173 40.5
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.6e-25 119.4 145 50.3
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 3.3e-25 119.0 156 44.9
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 3.3e-25 119.0 150 47.3
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 4.4e-25 118.6 148 52.0
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 4.4e-25 118.6 157 46.5
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 7.5e-25 117.9 149 61.1
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.5e-25 117.9 166 44.6
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 9.7e-25 117.5 178 54.5
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.3e-24 117.1 166 44.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.4e-23 112.8 157 42.0
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 9.1e-23 110.9 162 49.4
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 2.7e-22 109.4 170 39.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.0e-21 107.5 155 43.9
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 1.7e-21 106.7 156 42.9
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 2.2e-21 106.3 144 43.8
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.8e-21 105.5 140 60.7
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.0e-21 105.1 148 43.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 6.5e-21 104.8 182 42.3
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 6.5e-21 104.8 148 50.7
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.1e-20 104.0 152 46.1
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-20 103.6 159 45.9
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.5e-20 103.6 159 45.3
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.9e-20 103.2 156 50.0
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.9e-20 103.2 204 34.8
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 4.2e-20 102.1 158 46.2
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 4.2e-20 102.1 204 35.3
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 7.2e-20 101.3 142 44.4
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.6e-19 100.1 154 48.1
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.6e-19 100.1 160 40.6
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.6e-19 99.0 156 40.4
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 3.6e-19 99.0 155 51.0
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.7e-19 98.6 177 46.3
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 6.1e-19 98.2 159 40.3
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 3.0e-18 95.9 170 35.3
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 4.0e-18 95.5 155 45.8
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 5.2e-18 95.1 157 40.1
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 5.2e-18 95.1 159 38.4
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.2e-18 95.1 149 43.0
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 6.8e-18 94.7 160 41.2
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 6.8e-18 94.7 162 38.3
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 6.8e-18 94.7 157 38.2
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.2e-17 94.0 143 39.2
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.5e-17 93.6 160 47.5
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 3.4e-17 92.4 156 38.5
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.7e-16 90.1 147 53.1
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 1.7e-16 90.1 160 38.1
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.8e-16 89.4 151 35.8
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 3.7e-16 89.0 145 40.7
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 6.3e-16 88.2 145 40.0
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.1e-15 87.4 140 39.3
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 1.4e-15 87.0 167 37.1
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.8e-15 86.7 137 37.2
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 2.4e-15 86.3 155 43.9
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 2.4e-15 86.3 135 42.2
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.1e-15 85.9 155 36.8
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 9.1e-15 84.3 159 39.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 9.1e-15 84.3 141 37.6
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.8e-13 79.0 136 36.8
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.2e-11 73.9 81 48.1
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.6e-11 72.4 149 34.2
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 1.8e-10 70.1 78 47.4
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 2.3e-10 69.7 92 56.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 2.3e-10 69.7 95 44.2
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 1.2e-09 67.4 83 44.6
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.6e-09 66.2 107 39.3
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 9.8e-09 64.3 99 38.4
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.1e-07 60.8 93 38.7
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 2.4e-07 59.7 29 82.8
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 7.0e-07 58.2 41 58.5
Nitab4.5_0000957g0030 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.2e-06 57.4 30 80.0


User provided reference genes

Program Settings