Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.8e-52 209.1 116 100.0
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.4e-51 203.8 116 99.1
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.4e-46 189.5 117 85.5
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.9e-46 189.1 139 82.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-44 183.0 92 98.9
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 8.8e-44 180.3 115 82.6
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.3e-42 176.4 117 79.5
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 6.3e-42 174.1 101 87.1
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.1e-41 173.3 115 78.3
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.4e-41 172.9 115 78.3
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.4e-41 172.9 117 76.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.4e-41 172.9 117 76.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.4e-41 172.9 117 76.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 4.1e-41 171.4 117 76.1
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 9.1e-41 170.2 115 77.4
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.5e-40 169.5 115 75.7
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.5e-40 169.5 117 75.2
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 1.5e-40 169.5 115 74.8
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 2.6e-40 168.7 115 75.7
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 3.4e-40 168.3 117 74.4
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 5.9e-40 167.5 115 74.8
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 7.7e-40 167.2 115 75.7
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.0e-39 166.8 115 76.5
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.7e-39 166.0 115 73.9
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.7e-39 166.0 128 68.8
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.7e-39 166.0 128 68.8
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 2.9e-39 165.2 113 74.3
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.9e-39 165.2 117 73.5
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 6.5e-39 164.1 115 73.9
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.5e-39 164.1 116 73.3
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 8.5e-39 163.7 139 63.3
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 8.5e-39 163.7 139 63.3
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.4e-38 162.9 117 70.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.9e-38 162.5 117 71.8
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.9e-38 162.5 115 73.0
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.2e-37 159.8 117 70.1
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.6e-37 159.5 115 71.3
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 4.7e-37 157.9 117 70.1
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 6.1e-37 157.5 116 70.7
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 6.1e-37 157.5 115 73.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 6.1e-37 157.5 115 73.0
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 7.9e-37 157.1 114 72.8
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.8e-36 156.0 114 72.8
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.3e-36 155.6 113 72.6
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.3e-36 155.6 115 72.2
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.9e-36 154.8 115 68.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 5.1e-36 154.5 117 70.1
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 6.7e-36 154.1 115 70.4
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 6.7e-36 154.1 115 71.3
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 6.7e-36 154.1 116 73.3
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 8.8e-36 153.7 114 71.1
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.5e-35 152.9 114 71.1
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 2.0e-35 152.5 125 65.6
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 2.0e-35 152.5 129 63.6
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.3e-35 151.8 115 67.8
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.3e-35 151.8 115 69.6
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.4e-35 151.4 115 71.3
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 7.4e-35 150.6 123 67.5
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 9.7e-35 150.2 115 68.7
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.3e-34 149.8 115 67.8
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.8e-34 148.7 115 67.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.7e-34 148.3 119 68.1
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 3.7e-34 148.3 115 72.2
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 4.8e-34 147.9 114 69.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 8.2e-34 147.1 128 64.1
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.1e-33 146.7 99 72.7
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.1e-33 146.7 111 69.4
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-33 146.4 111 71.2
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.4e-33 146.4 118 67.8
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 4.1e-33 144.8 115 67.8
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 4.1e-33 144.8 124 65.3
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 9.1e-33 143.7 111 70.3
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 9.1e-33 143.7 125 64.0
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 9.1e-33 143.7 115 67.0
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.5e-32 142.9 130 60.0
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.5e-32 142.9 115 68.7
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.5e-32 142.9 115 68.7
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 7.7e-32 140.6 116 63.8
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 7.7e-32 140.6 115 66.1
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.0e-31 140.2 114 64.9
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.3e-31 139.8 115 65.2
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 2.9e-31 138.7 117 65.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 5.0e-31 137.9 126 59.5
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 8.5e-31 137.1 111 65.8
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.2e-30 135.2 117 63.2
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 7.2e-30 134.0 117 62.4
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.2e-29 133.3 117 60.7
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.6e-29 132.9 117 61.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.4e-28 129.8 115 60.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.3e-28 129.0 149 50.3
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.2e-28 127.9 115 62.6
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 1.5e-27 126.3 115 60.0
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.8e-26 122.1 115 56.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 3.7e-26 121.7 114 57.0
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 3.7e-26 121.7 107 62.6
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 6.3e-26 120.9 114 57.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 6.3e-26 120.9 113 55.8
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.1e-25 118.6 170 43.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.3e-25 117.9 107 61.7
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.6e-24 116.3 115 54.8
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 1.0e-23 113.6 116 56.0
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-23 113.2 112 58.0
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.8e-23 111.7 117 53.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 5.0e-23 111.3 112 57.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 4.2e-22 108.2 156 45.5
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.2e-21 106.7 126 47.6
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.1e-21 105.9 115 53.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 4.7e-21 104.8 88 60.2
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 2.3e-20 102.4 98 58.2
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 5.2e-20 101.3 83 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 6.8e-20 100.9 106 52.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.5e-19 99.8 113 50.4
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.0e-19 99.4 54 87.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.6e-19 99.0 115 50.4
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.7e-19 97.8 115 50.4
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.2e-18 95.9 101 53.5
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.8e-18 95.5 86 55.8
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 4.8e-18 94.7 107 52.3
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 7.0e-17 90.9 54 79.6
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 3.5e-16 88.6 53 79.2
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.0e-15 84.7 79 54.4
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 6.5e-15 84.3 54 68.5
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 6.1e-13 77.8 170 34.1
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.0e-12 77.0 46 73.9
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.3e-12 75.9 98 51.0
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.2e-10 69.3 83 48.2
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 8.3e-10 67.4 48 68.8
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-09 65.1 47 72.3
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.0e-08 62.8 39 74.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 2.0e-08 62.8 46 73.9
Nn3g16162 Nelumbo nucifera HOM05D006060 ORTHO05D007268 3.3e-06 55.5 28 96.4


User provided reference genes

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