Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2709 Fragaria x ananassa HOM05D008833 ORTHO05D019151 2.2e-117 425.6 210 100.0
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 9.1e-108 393.7 254 81.9
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 2.5e-25 119.8 257 35.8
RcHm_v2.0_Chr1g0337971 Rosa chinensis HOM05D008833 ORTHO05D010662 4.2e-20 102.4 129 39.5
RcHm_v2.0_Chr1g0339401 Rosa chinensis HOM05D008833 ORTHO05D010662 4.2e-20 102.4 129 39.5
RcHm_v2.0_Chr5g0032971 Rosa chinensis HOM05D013134 ORTHO05D035491 5.5e-20 102.1 64 75.0
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 9.4e-20 101.3 161 37.3
FvH4_4g01641 Fragaria vesca HOM05D000003 ORTHO05D000006 2.7e-19 99.8 210 33.3
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 4.6e-19 99.0 207 37.2
FAN17G0972 Fragaria x ananassa HOM05D013134 ORTHO05D019151 2.3e-18 96.7 131 44.3
RcHm_v2.0_Chr0c22g0500391 Rosa chinensis HOM05D008833 ORTHO05D000167 6.7e-18 95.1 135 43.0
FvH4_3g21363 Fragaria vesca HOM05D000514 ORTHO05D000222 8.8e-18 94.7 190 36.3
FvH4_4g22411 Fragaria vesca HOM05D021063 ORTHO05D010662 1.5e-17 94.0 134 39.6
FAN16G3643 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.5e-17 94.0 147 39.5
RcHm_v2.0_Chr5g0046251 Rosa chinensis HOM05D008833 ORTHO05D010662 5.7e-17 92.0 152 33.6
FAN05G2492 Fragaria x ananassa HOM05D016052 ORTHO05D010662 7.4e-17 91.7 134 38.8
FAN25G0424 Fragaria x ananassa HOM05D008833 ORTHO05D010662 7.4e-17 91.7 167 37.1
FAN08G1529 Fragaria x ananassa HOM05D030612 ORTHO05D019151 2.2e-16 90.1 123 40.7
FvH4_5g29821 Fragaria vesca HOM05D008833 ORTHO05D010662 2.8e-16 89.7 135 40.0
FvH4_5g33571 Fragaria vesca HOM05D030612 ORTHO05D019151 4.8e-16 89.0 135 39.3
FAN19G2126 Fragaria x ananassa HOM05D001715 ORTHO05D012679 1.1e-15 87.8 212 33.0
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 1.1e-15 87.8 155 33.5
FAN14G5071 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.4e-15 87.4 148 35.8
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 4.1e-15 85.9 152 31.6
FvH4_6g12333 Fragaria vesca HOM05D008833 ORTHO05D010662 5.3e-15 85.5 142 39.4
FvH4_1g26014 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-14 84.3 158 37.3
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.5e-14 84.0 269 26.8
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.6e-14 83.2 269 26.8
FAN02G4016 Fragaria x ananassa HOM05D000061 ORTHO05D010662 5.9e-14 82.0 154 31.2
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 5.9e-14 82.0 152 31.6
RcHm_v2.0_Chr5g0047711 Rosa chinensis HOM05D008833 ORTHO05D000167 1.7e-13 80.5 144 34.7
RcHm_v2.0_Chr2g0107121 Rosa chinensis HOM05D008833 ORTHO05D010662 3.8e-13 79.3 146 32.9
FvH4_3g30011 Fragaria vesca HOM05D008833 ORTHO05D010662 5.0e-13 79.0 213 29.6
FvH4_1g18471 Fragaria vesca HOM05D016749 ORTHO05D019194 6.5e-13 78.6 202 29.2
FvH4_6g29902 Fragaria vesca HOM05D013134 ORTHO05D012679 6.5e-13 78.6 132 37.9
RcHm_v2.0_Chr2g0122921 Rosa chinensis HOM05D008833 ORTHO05D000167 1.1e-12 77.8 157 31.2
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-12 77.4 154 30.5
RcHm_v2.0_Chr6g0276431 Rosa chinensis HOM05D008833 ORTHO05D010662 4.2e-12 75.9 141 31.9
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 7.2e-12 75.1 171 29.8
FvH4_3g22561 Fragaria vesca HOM05D000003 ORTHO05D000006 1.6e-11 73.9 158 33.5
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 2.7e-11 73.2 180 26.1
FvH4_4g12120 Fragaria vesca HOM05D008833 ORTHO05D019151 6.1e-11 72.0 128 33.6
FAN04G0868 Fragaria x ananassa HOM05D030612 ORTHO05D019151 7.9e-11 71.6 60 56.7
FvH4_2g19763 Fragaria vesca HOM05D008833 ORTHO05D012679 1.8e-10 70.5 53 66.0
FvH4_4g17370 Fragaria vesca HOM05D021063 ORTHO05D025444 1.8e-10 70.5 97 43.3
FAN16G0367 Fragaria x ananassa HOM05D008833 ORTHO05D010662 2.3e-10 70.1 140 35.7
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-10 70.1 165 28.5
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 3.0e-10 69.7 222 26.1
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.0e-10 69.7 157 28.0
RcHm_v2.0_Chr7g0229351 Rosa chinensis HOM05D009322 ORTHO05D010713 6.7e-10 68.6 162 29.0
FvH4_3g02851 Fragaria vesca HOM05D013659 ORTHO05D012679 1.5e-09 67.4 80 45.0
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 3.3e-09 66.2 154 27.3
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 3.3e-09 66.2 154 29.9
Atru.chr13.1583 Acer truncatum HOM05D000003 ORTHO05D000167 4.4e-09 65.9 150 33.3
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 4.4e-09 65.9 148 28.4
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 4.4e-09 65.9 149 28.2
Prupe.6G272800 Prunus persica HOM05D000003 ORTHO05D000167 4.4e-09 65.9 138 27.5
RcHm_v2.0_Chr5g0044391 Rosa chinensis HOM05D008833 ORTHO05D010662 4.4e-09 65.9 136 27.2
FvH4_7g08941 Fragaria vesca HOM05D029290 ORTHO05D014631 5.7e-09 65.5 160 31.2
FAN12G1221 Fragaria x ananassa HOM05D021063 ORTHO05D025444 1.7e-08 63.9 108 37.0
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-08 63.5 159 28.3
RcHm_v2.0_Chr1g0331041 Rosa chinensis HOM05D013595 ORTHO05D010662 2.2e-08 63.5 62 45.2
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 2.8e-08 63.2 147 28.6
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 2.8e-08 63.2 138 29.7
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 3.7e-08 62.8 142 30.3
FAN28G1122 Fragaria x ananassa HOM05D013595 ORTHO05D010662 4.8e-08 62.4 136 32.4
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 4.8e-08 62.4 156 28.8
FvH4_1g27452 Fragaria vesca HOM05D009322 ORTHO05D010713 6.3e-08 62.0 189 27.5
FAN03G3249 Fragaria x ananassa HOM05D013659 ORTHO05D012679 8.2e-08 61.6 134 38.1
FAN11G3434 Fragaria x ananassa HOM05D000013 ORTHO05D000011 8.2e-08 61.6 68 47.1
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-07 61.2 130 35.4
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-07 60.5 157 26.1
FvH4_5g25501 Fragaria vesca HOM05D013134 ORTHO05D012679 3.1e-07 59.7 85 45.9
RcHm_v2.0_Chr4g0410641 Rosa chinensis HOM05D000003 ORTHO05D000004 3.1e-07 59.7 55 47.3
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 4.1e-07 59.3 267 23.2
RcHm_v2.0_Chr2g0147661 Rosa chinensis HOM05D000003 ORTHO05D010713 4.1e-07 59.3 168 28.0
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 5.3e-07 58.9 165 30.3
CANSAT56G0865 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-07 58.9 188 25.5
FAN03G0460 Fragaria x ananassa HOM05D008833 ORTHO05D010662 5.3e-07 58.9 79 35.4
FAN11G2316 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.3e-07 58.9 61 44.3
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 7.0e-07 58.5 169 26.6
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 7.0e-07 58.5 161 26.7
Atru.chr13.2597 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-07 58.5 200 26.0
CANSAT64G1882 Cannabis sativa HOM05D000003 ORTHO05D000167 7.0e-07 58.5 188 26.6
CANSAT01G1430 Cannabis sativa HOM05D000003 ORTHO05D000167 9.1e-07 58.2 153 28.8
FAN28G1633 Fragaria x ananassa HOM05D013134 ORTHO05D010662 9.1e-07 58.2 66 39.4
Prupe.7G076800 Prunus persica HOM05D000003 ORTHO05D000167 9.1e-07 58.2 171 26.9
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 1.2e-06 57.8 159 28.3
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.8 159 31.4
Dinv41573 Davidia involucrata HOM05D000003 ORTHO05D000167 1.2e-06 57.8 123 29.3
FAN03G2590 Fragaria x ananassa HOM05D009322 ORTHO05D010713 1.2e-06 57.8 127 30.7
RcHm_v2.0_Chr7g0226691 Rosa chinensis HOM05D009383 ORTHO05D011656 1.2e-06 57.8 175 25.1
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 57.4 174 25.3
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 1.5e-06 57.4 157 29.9
Prupe.4G143500 Prunus persica HOM05D000003 ORTHO05D000167 1.5e-06 57.4 150 24.0
CANSAT37G0018 Cannabis sativa HOM05D000003 ORTHO05D000167 2.6e-06 56.6 152 28.3
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 2.6e-06 56.6 161 24.2
FAN06G4412 Fragaria x ananassa HOM05D002512 ORTHO05D002660 2.6e-06 56.6 54 50.0
FAN14G4974 Fragaria x ananassa HOM05D013134 ORTHO05D012679 2.6e-06 56.6 138 30.4
FAN19G2949 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.6e-06 56.6 67 43.3
FAN22G0690 Fragaria x ananassa HOM05D013595 ORTHO05D010662 2.6e-06 56.6 75 34.7
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 2.6e-06 56.6 152 27.6
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 2.6e-06 56.6 156 26.9
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.5e-06 56.2 159 26.4
Nitab4.5_0006350g0010 Nicotiana tabacum HOM05D000024 ORTHO05D000007 3.5e-06 56.2 55 47.3
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 3.5e-06 56.2 225 25.3
CANSAT56G0133 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-06 55.8 153 28.8
FvH4_3g30482 Fragaria vesca HOM05D013134 ORTHO05D025444 4.5e-06 55.8 67 41.8
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-06 55.8 54 46.3
Atru.chr10.8 Acer truncatum HOM05D000003 ORTHO05D000167 5.9e-06 55.5 178 24.7
CANSAT25G1682 Cannabis sativa HOM05D000003 ORTHO05D000167 7.7e-06 55.1 130 31.5
COL.COLO4_11797 Corchorus olitorius HOM05D009774 ORTHO05D000167 7.7e-06 55.1 151 23.2
FAN12G2205 Fragaria x ananassa HOM05D013595 ORTHO05D010662 7.7e-06 55.1 73 34.2
Nitab4.5_0001151g0080 Nicotiana tabacum HOM05D008381 ORTHO05D004636 7.7e-06 55.1 87 34.5
Peaxi162Scf01133g00022 Petunia axillaris HOM05D000003 ORTHO05D000167 7.7e-06 55.1 156 25.6


User provided reference genes

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