Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 0.0e+00 1169.8 619 100.0
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 0.0e+00 1158.7 619 95.5
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 0.0e+00 1102.8 626 93.0
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.0e-308 1061.2 636 89.8
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.7e-308 1059.7 626 90.6
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 8.5e-279 963.4 619 79.3
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 4.0e-244 848.2 623 70.8
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 6.4e-242 840.9 623 73.8
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 8.3e-242 840.5 620 68.9
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 7.8e-240 833.9 623 70.0
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 6.6e-231 804.3 614 67.6
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.6e-230 801.2 617 67.4
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.4e-228 796.6 631 66.1
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.3e-228 795.8 631 66.1
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 8.9e-228 793.9 620 66.3
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.2e-227 793.5 623 66.3
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 3.4e-227 792.0 621 69.7
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.4e-225 785.8 617 68.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 4.1e-225 785.0 619 68.8
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.4e-225 784.6 621 65.9
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 7.1e-225 784.3 626 68.4
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.7e-223 779.6 621 68.6
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.1e-222 776.9 625 64.8
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.5e-222 776.5 623 68.7
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 4.3e-222 775.0 619 64.6
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 2.8e-221 772.3 618 68.1
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.4e-220 769.2 622 69.5
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 5.2e-220 768.1 619 64.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 6.9e-220 767.7 637 63.4
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 6.4e-218 761.1 625 62.4
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 8.4e-218 760.8 620 63.4
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-217 760.0 622 63.5
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-217 760.0 623 63.6
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 7.1e-217 757.7 623 62.3
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 9.3e-217 757.3 631 62.3
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 6.0e-216 754.6 623 66.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.3e-215 753.4 625 62.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.3e-215 753.4 617 63.5
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.9e-215 751.9 625 63.0
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 8.7e-215 750.7 625 63.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.7e-215 750.7 627 63.2
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 9.0e-212 740.7 624 64.6
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 3.4e-211 738.8 634 62.6
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.5e-211 738.4 623 65.0
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 5.8e-211 738.0 626 62.6
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.2e-210 736.1 621 64.3
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 7.1e-209 731.1 623 62.3
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 9.3e-209 730.7 624 64.1
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 9.3e-209 730.7 628 61.3
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.2e-208 730.3 618 61.3
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.1e-208 729.6 624 61.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 4.6e-208 728.4 617 64.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.3e-207 726.9 624 60.6
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.3e-207 726.9 628 64.3
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 4.3e-206 721.8 624 59.9
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 5.6e-206 721.5 573 65.6
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.6e-205 718.8 623 61.2
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 4.0e-204 715.3 618 60.2
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 5.3e-204 714.9 612 60.6
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.0e-204 714.1 623 59.7
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-203 713.8 625 58.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-203 713.4 573 65.1
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 4.5e-203 711.8 620 61.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.5e-203 711.8 619 62.2
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.8e-203 711.4 620 61.9
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 9.9e-203 710.7 625 59.5
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.3e-202 710.3 622 60.9
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.7e-202 709.9 622 61.9
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.9e-202 709.1 619 59.1
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 3.8e-202 708.8 611 63.2
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 3.8e-202 708.8 618 60.0
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.4e-202 708.0 622 58.7
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.4e-201 706.8 622 58.7
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.9e-201 706.4 618 59.9
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.2e-200 703.7 643 60.5
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 5.1e-199 698.4 622 58.8
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 6.7e-199 698.0 626 58.0
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.3e-198 695.7 625 62.6
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.4e-198 694.5 623 59.4
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.4e-196 690.3 619 58.0
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.4e-195 685.6 631 59.3
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.6e-195 684.5 661 54.5
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 2.1e-192 676.4 734 52.5
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.3e-191 673.7 634 60.7
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.8e-191 673.3 673 53.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 4.3e-190 668.7 632 55.9
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.3e-189 667.2 623 58.3
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.4e-188 663.7 620 60.8
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 3.1e-188 662.5 620 60.8
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.0e-183 647.5 629 56.3
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.0e-183 647.5 677 54.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 5.7e-182 641.7 649 53.2
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.8e-178 629.0 620 54.8
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.2e-177 625.5 687 49.9
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.0e-175 620.9 737 48.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 6.3e-173 611.7 649 52.1
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.5e-171 607.1 618 57.1
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.0e-170 604.4 608 53.8
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 5.5e-169 598.6 517 59.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.0e-166 590.1 621 51.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 9.7e-166 587.8 586 55.1
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.7e-165 585.9 619 53.5
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 5.3e-164 582.0 594 54.5
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 9.7e-158 561.2 618 50.6
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.7e-154 550.4 653 51.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 6.8e-143 511.9 512 53.1
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.6e-120 437.6 320 67.5
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 5.2e-119 432.6 440 52.7
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.7e-114 417.5 335 61.8
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-112 411.0 416 54.8
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.8e-111 407.5 452 56.6
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-107 394.0 414 53.9
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 5.6e-105 386.0 452 51.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.6e-105 386.0 384 52.6
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.1e-104 382.1 402 53.2
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-100 371.3 414 51.4
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-97 361.7 398 52.3
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-97 361.7 416 50.7
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.3e-97 359.8 416 50.7
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.1e-88 328.9 386 50.0
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.3e-85 321.6 202 77.7
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.2e-84 316.6 417 45.6
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.9e-81 307.8 577 32.6
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.0e-79 300.1 540 33.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.0e-71 272.3 517 34.8
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.4e-66 258.5 511 31.5
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 8.2e-64 249.2 525 29.7
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 3.2e-60 237.3 259 50.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 4.8e-56 223.4 167 67.7
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.5e-54 218.4 212 57.1
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 2.0e-54 218.0 523 28.1
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.7e-48 198.4 168 61.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.0e-46 191.4 237 46.0
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.2e-45 188.0 253 43.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.2e-35 155.6 103 70.9
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.8e-34 149.8 113 68.1
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 4.5e-30 137.1 108 63.0
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-28 132.1 104 65.4
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.8e-26 125.2 97 59.8
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 1.3e-24 119.0 198 37.9
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 1.1e-23 115.9 89 59.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.0e-23 113.2 98 53.1
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.0e-22 111.7 97 53.6
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.9e-21 107.8 80 67.5
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 4.3e-20 104.0 94 54.3
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 1.6e-19 102.1 83 56.6
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.3e-16 92.4 67 64.2
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.3e-16 92.4 67 64.2
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 6.0e-14 83.6 67 59.7
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 2.3e-13 81.6 170 35.9
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.3e-12 76.6 44 77.3
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 7.3e-12 76.6 44 77.3
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.6e-11 75.5 48 75.0
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 2.9e-08 64.7 222 26.6
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 4.9e-08 63.9 214 28.0
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 8.3e-08 63.2 222 27.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.2e-06 59.3 96 39.6
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 1.2e-06 59.3 222 26.1
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 7.8e-06 56.6 50 52.0
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 7.8e-06 56.6 120 30.0


User provided reference genes

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