Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-89 332.4 178 100.0
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 6.4e-86 320.9 197 90.4
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.5e-82 308.9 178 89.9
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.2e-79 300.1 177 88.7
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.7e-78 296.2 182 87.9
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-77 293.1 177 87.6
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 5.1e-75 284.6 178 87.1
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.6e-75 283.9 244 66.4
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.8e-64 249.6 167 77.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.8e-64 249.6 166 77.1
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.3e-56 221.5 166 69.9
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 5.8e-55 218.0 169 69.8
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.3e-54 216.9 166 68.1
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 2.9e-54 215.7 167 67.7
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.4e-53 213.4 166 66.9
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 3.2e-53 212.2 166 68.7
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 7.1e-53 211.1 174 66.7
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 9.3e-53 210.7 176 64.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 9.3e-53 210.7 168 67.9
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.2e-52 210.3 166 68.7
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.6e-52 209.9 155 70.3
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 2.1e-52 209.5 166 66.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.0e-51 207.2 166 65.7
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.9e-51 205.3 166 65.7
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 5.1e-51 204.9 168 64.9
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 6.7e-51 204.5 168 64.9
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.3e-50 202.2 168 64.3
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 4.3e-50 201.8 166 63.9
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 9.6e-50 200.7 166 62.7
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.6e-49 199.9 164 63.4
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 4.8e-49 198.4 166 62.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 6.2e-49 198.0 167 64.7
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 6.2e-49 198.0 166 63.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.1e-48 197.2 162 64.2
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 4.0e-48 195.3 158 65.2
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 9.0e-48 194.1 166 62.7
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 7.6e-47 191.0 168 63.1
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 9.9e-47 190.7 166 63.9
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 9.9e-47 190.7 166 62.7
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.3e-46 190.3 172 61.6
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.3e-46 190.3 166 63.3
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 2.9e-46 189.1 165 61.2
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.4e-46 187.6 166 60.8
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.4e-45 186.8 163 62.6
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.4e-45 186.8 163 62.6
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 4.2e-45 185.3 160 60.6
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 5.5e-45 184.9 163 62.6
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 7.1e-45 184.5 161 62.1
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.2e-44 183.7 174 59.8
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 2.7e-44 182.6 166 59.0
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 3.5e-44 182.2 160 60.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 7.9e-44 181.0 166 60.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 5.1e-43 178.3 171 56.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.5e-42 176.8 167 60.5
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.3e-42 175.6 160 61.9
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 5.6e-42 174.9 160 60.0
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 7.4e-42 174.5 168 58.3
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 9.6e-42 174.1 173 57.2
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.3e-41 173.7 159 61.0
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 2.8e-41 172.6 166 56.6
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 3.7e-41 172.2 166 56.6
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 4.8e-41 171.8 158 58.9
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 6.2e-41 171.4 106 80.2
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 6.2e-41 171.4 173 56.6
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.1e-40 170.6 168 54.8
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.1e-40 170.6 167 56.3
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.8e-40 169.9 164 53.0
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 4.0e-40 168.7 168 54.8
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 9.0e-40 167.5 168 56.5
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.2e-39 167.2 168 56.0
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.2e-39 167.2 168 56.0
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 2.6e-39 166.0 168 55.4
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.4e-39 165.6 166 54.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.5e-39 165.2 164 56.1
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 4.5e-39 165.2 163 57.1
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 7.6e-39 164.5 167 54.5
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.0e-38 164.1 168 54.2
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.0e-38 164.1 163 56.4
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.3e-38 163.7 171 55.0
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.3e-38 163.7 171 55.0
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.7e-38 163.3 112 75.9
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.9e-38 162.5 166 53.0
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 6.5e-38 161.4 171 55.0
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 8.4e-38 161.0 166 55.4
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.4e-37 160.2 164 54.3
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.5e-37 159.5 104 76.0
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 4.2e-37 158.7 166 51.8
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 5.5e-37 158.3 155 56.1
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-36 157.1 171 51.5
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.7e-36 156.0 169 49.7
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.7e-36 156.0 119 68.1
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 3.5e-36 155.6 165 55.8
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 3.5e-36 155.6 128 62.5
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 7.9e-36 154.5 166 53.0
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.3e-35 153.7 166 52.4
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.3e-35 153.7 166 50.6
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.9e-35 152.1 183 50.8
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 8.7e-35 151.0 160 53.8
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.9e-34 149.8 136 56.6
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.5e-34 149.4 165 51.5
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 7.4e-34 147.9 165 50.9
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 1.6e-33 146.7 166 51.8
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 2.8e-33 146.0 165 49.7
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.8e-33 145.2 172 50.0
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.1e-32 144.1 121 62.0
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.8e-32 143.3 166 47.6
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 5.3e-32 141.7 106 67.9
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 5.3e-32 141.7 166 47.0
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 6.9e-32 141.4 158 51.3
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-31 140.6 165 49.1
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.5e-31 140.2 137 54.0
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.6e-31 139.4 160 51.2
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 6.5e-30 134.8 180 46.7
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.5e-29 132.9 171 45.6
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.2e-29 132.5 160 48.8
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 5.5e-29 131.7 165 48.5
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 9.3e-29 131.0 177 44.1
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 9.3e-29 131.0 159 47.2
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 7.9e-28 127.9 106 62.3
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 3.0e-27 125.9 129 55.0
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 3.9e-27 125.6 127 52.8
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 5.1e-27 125.2 169 45.6
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.7e-25 119.0 164 43.9
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 4.8e-25 118.6 80 75.0
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 4.1e-24 115.5 106 55.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 7.7e-23 111.3 106 53.8
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.3e-22 110.5 124 50.0
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 8.5e-22 107.8 76 72.4
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 3.2e-21 105.9 93 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 3.3e-18 95.9 172 36.6
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 8.2e-17 91.3 103 49.5
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 2.0e-10 70.1 94 46.8
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.3e-10 69.3 62 54.8
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 3.3e-10 69.3 102 45.1
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 3.3e-10 69.3 102 45.1
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.3e-09 67.4 112 34.8
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 2.2e-09 66.6 111 35.1


User provided reference genes

Program Settings