Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 0.0e+00 1439.9 799 100.0
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 0.0e+00 1414.4 806 97.3
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 0.0e+00 1353.2 749 100.0
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 0.0e+00 1336.2 810 91.0
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 0.0e+00 1324.7 878 86.3
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.7e-309 1065.1 814 74.2
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.7e-292 1009.2 822 71.4
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 8.2e-266 920.6 834 62.7
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 3.8e-263 911.8 826 64.2
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 1.1e-257 893.6 859 60.3
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.0e-255 887.1 798 62.9
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 8.5e-255 884.0 832 60.9
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.4e-254 883.2 826 62.6
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.4e-254 883.2 817 62.8
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 3.2e-254 882.1 833 61.3
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.0e-252 877.1 810 64.7
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.2e-250 869.4 852 59.9
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 4.8e-250 868.2 826 61.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 6.3e-250 867.8 846 59.3
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 8.2e-250 867.5 824 62.1
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-249 866.7 816 63.7
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 5.3e-249 864.8 843 59.7
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.3e-249 864.8 824 61.3
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-248 863.6 813 63.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.0e-248 862.8 845 60.5
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 2.0e-248 862.8 823 61.1
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.6e-248 862.4 833 61.5
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.4e-248 862.1 830 60.7
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 1.7e-247 859.8 817 60.6
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 2.2e-247 859.4 832 61.3
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 2.9e-247 859.0 821 60.8
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 1.2e-245 853.6 829 60.0
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 1.4e-244 850.1 828 59.8
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.3e-244 849.4 817 60.8
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.1e-244 848.2 815 58.7
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 6.7e-244 847.8 826 58.8
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.3e-242 843.6 809 64.0
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.7e-242 843.2 801 60.5
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.4e-241 840.1 838 61.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.4e-241 839.3 774 63.2
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 7.7e-240 834.3 811 60.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.0e-239 833.9 811 59.6
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 8.5e-239 830.9 820 58.4
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.1e-238 830.5 818 59.7
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 1.5e-238 830.1 817 59.2
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 5.5e-238 828.2 799 60.8
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 3.0e-236 822.4 817 60.3
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.0e-235 819.7 807 58.7
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.4e-235 818.5 828 57.1
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 5.3e-233 811.6 834 57.8
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 2.7e-232 809.3 840 58.7
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.2e-231 806.2 796 62.4
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 5.0e-231 805.1 808 58.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 8.5e-231 804.3 832 57.1
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.6e-229 800.0 825 58.1
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 2.1e-229 799.7 834 57.2
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 2.1e-229 799.7 800 57.5
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 3.6e-229 798.9 838 57.2
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 6.1e-229 798.1 798 59.9
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 4.0e-228 795.4 819 57.6
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 6.8e-228 794.7 816 57.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.8e-228 794.3 821 58.8
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 1.2e-227 793.9 839 56.6
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.2e-227 793.9 850 54.5
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 3.4e-227 792.3 822 55.5
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 4.4e-227 792.0 805 58.1
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 3.7e-226 788.9 789 59.4
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 1.4e-225 786.9 831 56.3
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.8e-225 786.6 830 56.7
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 7.7e-224 781.2 820 56.8
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 2.2e-223 779.6 817 58.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.1e-222 777.3 809 58.0
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.2e-222 775.4 827 56.8
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 5.5e-222 775.0 809 58.3
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 7.2e-222 774.6 826 57.0
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 2.0e-219 766.5 808 57.7
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-215 753.8 801 56.3
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.8e-213 746.1 837 54.0
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 8.0e-213 744.6 802 55.0
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 3.7e-210 735.7 801 55.7
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 3.7e-210 735.7 805 55.9
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.0e-203 713.4 800 55.0
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 3.4e-203 712.6 821 53.7
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 2.9e-202 709.5 821 53.7
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 3.0e-199 699.5 749 56.1
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 4.3e-198 695.7 822 53.2
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.3e-198 695.7 828 50.0
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 2.8e-197 693.0 825 53.7
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 1.4e-196 690.6 825 53.6
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 8.9e-196 688.0 687 59.8
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.6e-195 686.4 819 53.4
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 8.6e-191 671.4 825 52.2
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 8.6e-191 671.4 818 52.6
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.1e-190 671.0 785 52.9
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 3.6e-189 666.0 813 51.8
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.1e-188 662.9 829 48.9
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.9e-186 656.4 821 52.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.7e-183 647.1 820 50.7
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.9e-183 646.0 807 51.3
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.1e-182 644.4 823 49.9
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 1.9e-182 643.7 796 48.7
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 2.1e-181 640.2 794 50.9
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.1e-181 640.2 797 48.7
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 4.7e-181 639.0 657 58.8
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 1.4e-180 637.5 796 48.7
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.2e-179 634.4 941 44.1
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 1.5e-174 617.5 816 48.9
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 1.1e-166 591.3 820 46.1
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.9e-158 563.9 749 49.3
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.9e-153 547.4 281 100.0
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.9e-153 547.4 841 43.5
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 1.2e-147 528.1 442 63.6
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 4.5e-147 526.2 589 57.2
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 3.9e-143 513.1 727 47.7
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.2e-138 497.3 668 51.5
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 6.5e-138 495.7 694 46.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.5e-131 474.6 848 40.3
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.9e-130 470.3 730 43.4
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 2.4e-124 450.7 887 38.9
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.9e-123 446.0 474 62.7
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.5e-121 441.4 469 55.4
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 2.7e-120 437.2 549 55.2
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 4.8e-117 426.4 350 67.7
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 1.2e-115 421.8 524 52.1
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 4.5e-115 419.9 310 70.6
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 5.0e-114 416.4 537 52.0
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 4.4e-102 376.7 447 55.0
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 5.9e-99 366.3 842 36.2
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.3e-93 348.6 459 47.7
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 6.6e-90 336.3 528 42.4
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 6.8e-87 326.2 521 39.7
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.6e-83 315.1 665 36.5
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 7.8e-83 312.8 778 31.9
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 8.6e-82 309.3 903 33.2
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 7.3e-81 306.2 447 45.4
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 5.2e-63 246.9 786 29.8
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.3e-57 227.6 356 49.7
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.0e-50 206.1 385 46.5
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-50 203.8 388 37.6
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 6.9e-47 193.4 242 57.0
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.1e-44 186.0 345 38.0
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 9.0e-39 166.4 135 62.2
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-36 157.5 332 36.7
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-36 157.5 308 39.3
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.3e-32 146.0 136 59.6
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 1.5e-30 139.0 139 51.8
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.2e-28 130.2 135 58.5
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 4.3e-25 120.9 131 55.7
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.6e-22 111.7 142 46.5
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.0e-21 109.8 95 58.9
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 3.8e-21 107.8 97 59.8
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-20 104.8 209 40.2
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.9e-19 100.1 86 57.0
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.4e-18 99.4 81 61.7
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-18 99.4 338 31.7
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.0e-18 98.2 277 33.6
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.8e-16 91.7 221 35.3
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.8e-15 89.0 285 29.8
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.3e-13 82.8 141 41.1
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.9e-13 81.6 242 30.2
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.5e-13 80.1 73 56.2
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.2e-12 78.2 181 33.7
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 5.5e-12 77.4 171 37.4
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.7e-11 75.1 76 51.3
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-11 74.7 77 48.1
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 3.6e-11 74.7 337 30.3
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 1.0e-10 73.2 73 58.9
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 6.7e-10 70.5 51 70.6
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 6.7e-10 70.5 160 33.1
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.5e-09 69.3 66 54.5
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 5.7e-09 67.4 62 62.9
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 7.4e-09 67.0 106 42.5
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 7.4e-09 67.0 125 39.2
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.4e-09 67.0 115 35.7
HPP92_027652 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.2e-08 63.5 58 58.6
HPP92_006873 Vanilla planifolia HOM05D000450 ORTHO05D002608 7.0e-07 60.5 162 34.0
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-06 59.7 131 33.6
HPP92_028374 Vanilla planifolia HOM05D003551 ORTHO05D016818 1.6e-06 59.3 106 38.7
HPP92_006537 Vanilla planifolia HOM05D003551 ORTHO05D431158 2.0e-06 58.9 45 62.2


User provided reference genes

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