Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2567 Fragaria x ananassa HOM05D003117 ORTHO05D003612 6.4e-63 243.8 115 100.0
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.9e-47 191.8 90 100.0
FAN12G3237 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.9e-47 191.8 90 100.0
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 1.9e-43 179.1 90 94.4
FAN22G1146 Fragaria x ananassa HOM05D003117 ORTHO05D003612 9.0e-41 170.2 90 91.1
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 4.2e-38 161.4 92 82.6
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 4.2e-38 161.4 90 78.9
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 5.5e-38 161.0 90 80.0
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 2.7e-37 158.7 90 81.1
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 4.6e-37 157.9 90 80.0
FvH4_4g02060 Fragaria vesca HOM05D003117 ORTHO05D003612 6.0e-37 157.5 90 82.2
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 7.9e-37 157.1 90 80.0
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 1.8e-36 156.0 90 76.7
FAN12G3229 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.3e-36 155.6 89 82.0
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 3.0e-36 155.2 90 78.9
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 5.1e-36 154.5 90 77.8
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 5.1e-36 154.5 90 76.7
Lj6g0000554 Lotus japonicus HOM05D003117 ORTHO05D003612 5.1e-36 154.5 90 77.8
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 1.1e-35 153.3 90 76.7
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 1.9e-35 152.5 90 76.7
Glyma.10G001100 Glycine max HOM05D003117 ORTHO05D003612 1.9e-35 152.5 90 75.6
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 2.5e-35 152.1 90 77.8
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.5e-35 152.1 90 75.6
RcHm_v2.0_Chr4g0389431 Rosa chinensis HOM05D003117 ORTHO05D003612 2.5e-35 152.1 90 77.8
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 2.5e-35 152.1 90 75.6
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 2.5e-35 152.1 90 76.7
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 3.3e-35 151.8 90 76.7
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 3.3e-35 151.8 90 76.7
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 3.3e-35 151.8 90 74.4
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 3.3e-35 151.8 90 74.4
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 3.3e-35 151.8 90 76.7
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 4.3e-35 151.4 90 75.6
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 5.6e-35 151.0 90 73.3
Psat0s4097g0040 Pisum sativum HOM05D003117 ORTHO05D003612 5.6e-35 151.0 90 76.7
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 5.6e-35 151.0 90 74.4
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 7.4e-35 150.6 90 75.6
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 7.4e-35 150.6 90 74.4
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 7.4e-35 150.6 90 75.6
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 9.6e-35 150.2 90 75.6
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 9.6e-35 150.2 90 75.6
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 1.6e-34 149.4 90 74.4
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 1.6e-34 149.4 90 75.6
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 2.8e-34 148.7 90 73.3
Actinidia27515 Actinidia chinensis HOM05D003117 ORTHO05D003612 2.8e-34 148.7 90 73.3
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 2.8e-34 148.7 90 73.3
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 2.8e-34 148.7 90 73.3
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 2.8e-34 148.7 90 72.2
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 2.8e-34 148.7 89 74.2
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 3.7e-34 148.3 90 74.4
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 3.7e-34 148.3 90 74.4
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 3.7e-34 148.3 90 74.4
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 3.7e-34 148.3 90 74.4
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 4.8e-34 147.9 90 73.3
TPR.G39892 Trifolium pratense HOM05D003117 ORTHO05D003612 4.8e-34 147.9 90 75.6
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 6.2e-34 147.5 92 71.7
Cpa.g.c42693 Carica papaya HOM05D003117 ORTHO05D003612 1.1e-33 146.7 90 73.3
Ca_12210_v3 Cicer arietinum L. HOM05D003117 ORTHO05D003612 1.1e-33 146.7 90 74.4
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 1.1e-33 146.7 90 74.4
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 1.1e-33 146.7 90 72.2
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 1.4e-33 146.4 90 74.4
Lalb_Chr03g0037631 Lupinus albus HOM05D003117 ORTHO05D003612 1.8e-33 146.0 90 74.4
Psat6g136360 Pisum sativum HOM05D003117 ORTHO05D003612 1.8e-33 146.0 90 71.1
MELO3C014268.2 Cucumis melo HOM05D003117 ORTHO05D003612 2.4e-33 145.6 90 72.2
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 2.4e-33 145.6 90 72.2
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 2.4e-33 145.6 90 72.2
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 4.0e-33 144.8 90 73.3
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 4.0e-33 144.8 90 73.3
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 4.0e-33 144.8 90 72.2
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 5.3e-33 144.4 90 72.2
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 6.9e-33 144.1 90 70.0
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 6.9e-33 144.1 90 73.3
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 6.9e-33 144.1 90 73.3
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 6.9e-33 144.1 92 71.7
CsaV3_2G013240 Cucumis sativus L. HOM05D003117 ORTHO05D003612 9.0e-33 143.7 90 71.1
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 1.2e-32 143.3 90 67.8
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 1.2e-32 143.3 90 73.3
ClCG06G006600 Citrullus lanatus HOM05D003117 ORTHO05D003612 1.2e-32 143.3 90 71.1
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 1.2e-32 143.3 90 72.2
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 1.5e-32 142.9 90 70.0
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 1.5e-32 142.9 90 72.2
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.0e-32 142.5 90 72.2
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 2.0e-32 142.5 91 71.4
arahy.Tifrunner.gnm1.ann1.6YLS1K Arachis hypogaea HOM05D003117 ORTHO05D003612 3.4e-32 141.7 90 71.1
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 3.4e-32 141.7 90 73.3
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 5.8e-32 141.0 90 70.0
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 5.8e-32 141.0 91 70.3
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 5.8e-32 141.0 90 70.0
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 7.6e-32 140.6 90 71.1
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 1.0e-31 140.2 90 70.0
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 1.0e-31 140.2 90 72.2
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 1.3e-31 139.8 90 73.3
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 1.7e-31 139.4 91 70.3
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 1.7e-31 139.4 90 67.8
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.2e-31 139.0 92 66.3
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 2.9e-31 138.7 90 66.7
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 2.9e-31 138.7 90 68.9
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 2.9e-31 138.7 90 67.8
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 2.9e-31 138.7 90 67.8
PSO210G1820 Papaver somniferum HOM05D003117 ORTHO05D003612 4.9e-31 137.9 92 69.6
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 4.9e-31 137.9 90 68.9
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 4.9e-31 137.9 90 67.8
EL10Ac9g21398 Beta vulgaris HOM05D003117 ORTHO05D003612 6.5e-31 137.5 90 66.7
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 6.5e-31 137.5 90 68.9
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 6.5e-31 137.5 90 70.0
FAN17G1347 Fragaria x ananassa HOM05D003117 ORTHO05D003612 8.4e-31 137.1 67 92.5
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 8.4e-31 137.1 90 68.9
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 1.1e-30 136.7 90 70.0
FAN22G0079 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.9e-30 136.0 68 89.7
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 1.9e-30 136.0 90 66.7
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 2.5e-30 135.6 90 67.8
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 2.5e-30 135.6 90 66.7
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 2.5e-30 135.6 90 72.2
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 5.5e-30 134.4 90 65.6
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 7.1e-30 134.0 90 70.0
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 7.1e-30 134.0 90 65.6
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 7.1e-30 134.0 90 65.6
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 9.3e-30 133.7 90 66.7
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 9.3e-30 133.7 90 66.7
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 1.6e-29 132.9 91 67.0
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 2.7e-29 132.1 91 65.9
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 3.5e-29 131.7 90 68.9
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 6.0e-29 131.0 90 64.4
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 1.0e-28 130.2 90 67.8
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 1.0e-28 130.2 90 65.6
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 1.8e-28 129.4 90 67.8
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 1.8e-28 129.4 90 67.8
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 1.8e-28 129.4 90 67.8
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 1.8e-28 129.4 90 62.2
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 2.3e-28 129.0 90 65.6
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 3.9e-28 128.3 90 63.3
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.1e-28 127.9 89 62.9
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 6.7e-28 127.5 90 66.7
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 6.7e-28 127.5 90 66.7
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 6.7e-28 127.5 90 66.7
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 6.7e-28 127.5 90 65.6
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 8.7e-28 127.1 90 66.7
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 1.1e-27 126.7 90 66.7
MD16G1205500 Malus domestica HOM05D003117 ORTHO05D003612 1.1e-27 126.7 67 85.1
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 1.5e-27 126.3 90 65.6
BcaC07g37831 Brassica carinata HOM05D003117 ORTHO05D003612 2.5e-27 125.6 90 65.6
BolC8t48215H Brassica oleracea HOM05D003117 ORTHO05D003612 2.5e-27 125.6 90 65.6
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 2.5e-27 125.6 90 64.4
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 2.5e-27 125.6 90 61.1
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 4.3e-27 124.8 90 63.3
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 4.3e-27 124.8 90 58.9
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 4.3e-27 124.8 90 62.2
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 9.6e-27 123.6 90 61.1
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 2.8e-26 122.1 90 64.4
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 4.8e-26 121.3 90 63.3
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 4.8e-26 121.3 90 62.2
PGSC0003DMG400006106 Solanum tuberosum HOM05D003117 ORTHO05D003612 4.8e-26 121.3 70 75.7
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 1.1e-25 120.2 90 63.3
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 1.1e-25 120.2 90 63.3
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 1.1e-25 120.2 90 63.3
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 1.1e-25 120.2 90 63.3
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 1.4e-25 119.8 90 62.2
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 1.4e-25 119.8 90 56.7
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 6.9e-25 117.5 90 56.7
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 9.0e-25 117.1 90 60.0
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 1.5e-24 116.3 90 55.6
Manes.03G170200 Manihot esculenta HOM05D003117 ORTHO05D003612 4.5e-24 114.8 67 76.1
CAN.G749.34 Capsicum annuum HOM05D003117 ORTHO05D003612 1.3e-23 113.2 67 76.1
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 2.2e-23 112.5 90 57.8
Phvul.007G280000 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 9.3e-22 107.1 67 71.6
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 1.6e-21 106.3 117 49.6
Psat4g201840 Pisum sativum HOM05D003117 ORTHO05D003612 2.1e-21 105.9 71 69.0
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 3.0e-20 102.1 87 52.9
CAN.G5.43 Capsicum annuum HOM05D002610 ORTHO05D003612 1.1e-19 100.1 67 67.2
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 1.5e-19 99.8 91 51.6
SHI00569 Sapria himalayana HOM05D003117 ORTHO05D003612 6.9e-17 90.9 64 64.1
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 7.7e-16 87.4 94 43.6
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 1.0e-12 77.0 96 40.6
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.9e-12 75.1 57 59.6
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.5e-11 73.2 57 56.1
PRCOL_00005468 Prasinoderma coloniale HOM05D003117 ORTHO05D003612 4.8e-10 68.2 84 41.7


User provided reference genes

Program Settings