Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2556.6 1311 100.0
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 2500.7 1311 98.3
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2415.2 1311 95.3
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 2336.2 1319 91.1
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 2332.4 1319 91.1
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 2185.6 1186 95.0
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1935.6 1314 75.8
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1852.0 1339 70.9
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1578.1 1309 63.3
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1558.5 1422 58.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1490.3 1319 60.3
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1486.5 1279 59.5
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1484.2 1285 59.9
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1468.4 1279 59.3
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1458.4 1312 59.1
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1449.9 1287 58.7
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1447.2 1300 58.3
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1446.0 1305 57.8
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1424.5 1309 56.8
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1410.2 1308 56.0
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1404.8 1313 55.9
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1396.3 1313 56.5
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1370.9 1293 56.4
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1367.1 1282 56.1
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1360.9 1267 57.3
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1359.0 1271 56.6
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1355.9 1301 55.0
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1347.0 1315 54.9
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1345.5 1285 55.3
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1328.5 1305 54.2
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1327.0 1302 55.3
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1319.7 1283 54.3
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1319.7 1313 54.1
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1315.4 1301 54.9
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1314.7 1293 55.0
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1313.1 1288 52.8
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1307.7 1337 54.1
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1307.4 1153 58.2
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1307.0 1314 54.3
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1305.0 1305 53.6
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1298.5 1055 62.6
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1287.3 1307 53.2
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1279.2 1137 58.5
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1266.5 1321 51.2
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1263.4 1317 51.4
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1260.0 1306 50.8
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1258.8 1322 51.7
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1250.0 1310 52.4
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1246.9 1304 51.3
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1244.6 1314 52.4
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1242.6 1156 55.8
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1236.1 1283 51.3
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1231.5 1316 50.2
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1226.8 1288 50.8
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1211.1 1315 49.4
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1208.7 1290 50.5
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1208.4 1314 49.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1207.2 1307 50.3
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 0.0e+00 1207.2 1038 59.3
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1199.5 1331 48.7
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1198.3 1291 49.3
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1194.5 1309 48.9
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1190.6 1176 54.6
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 0.0e+00 1183.7 920 65.5
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1180.6 1339 47.9
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1177.2 1318 48.7
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1173.7 1315 48.7
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1167.5 1315 48.7
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1167.5 1315 48.7
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1165.2 1124 56.8
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1165.2 1292 49.8
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1164.8 1317 48.5
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 0.0e+00 1159.1 1132 53.8
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1155.6 1149 53.9
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1153.3 1282 49.3
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1151.0 1282 49.4
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 0.0e+00 1113.2 1286 49.6
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 1107.4 1316 46.8
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1107.0 1286 46.6
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 1081.2 1262 47.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 3.6e-311 1072.0 1198 48.5
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 3.9e-310 1068.5 1239 47.1
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.3e-308 1063.5 1239 47.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 1.2e-282 977.2 866 59.7
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.6e-282 976.9 992 52.3
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.9e-267 926.8 1208 44.0
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 9.0e-262 907.9 1114 44.3
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 3.7e-255 885.9 756 61.2
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 2.6e-253 879.8 1051 46.1
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 4.6e-242 842.4 1157 42.4
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.3e-228 797.7 843 50.2
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.1e-216 758.1 1030 42.1
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 5.7e-216 755.7 1007 41.9
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 4.8e-215 752.7 796 50.8
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 2.7e-213 746.9 769 53.7
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 1.3e-212 744.6 1279 37.2
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.2e-190 670.2 681 52.0
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 4.4e-176 623.2 590 55.8
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 2.1e-173 614.4 462 66.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 1.2e-165 588.6 500 61.2
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 7.8e-165 585.9 644 49.2
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 8.9e-161 572.4 719 46.3
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 8.1e-138 496.1 654 44.3
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.6e-136 491.1 394 64.2
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 9.3e-134 482.6 470 56.0
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 6.5e-119 433.3 609 46.5
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 9.1e-113 412.9 1280 28.0
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.4e-107 394.0 479 44.9
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 2.3e-92 345.1 1264 26.6
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.0e-87 329.7 358 48.3
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 2.0e-83 315.5 382 46.3
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.1e-73 283.1 381 42.8
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.3e-71 276.2 382 40.8
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 5.2e-60 237.7 130 95.4
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.9e-58 231.9 290 44.5
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 4.6e-48 198.0 170 58.2
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.1e-45 189.1 326 39.9
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 7.1e-41 174.1 194 48.5
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 6.0e-40 171.0 134 60.4
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.2e-35 156.8 139 60.4
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 5.8e-35 154.5 158 53.2
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 6.0e-32 144.4 150 54.0
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 1.1e-28 133.7 116 61.2
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 2.6e-27 129.0 110 57.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 3.7e-21 108.6 147 38.8
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 2.2e-18 99.4 481 22.9
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 2.2e-18 99.4 117 49.6
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.5e-16 92.0 65 70.8
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.0e-15 90.5 111 45.9
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 3.7e-13 82.0 76 52.6
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 8.5e-10 70.9 59 59.3


User provided reference genes

Program Settings