Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2503 Fragaria x ananassa HOM05D054013 ORTHO05D207282 4.3e-178 627.9 313 100.0
FAN23G0986 Fragaria x ananassa HOM05D054013 ORTHO05D207633 7.1e-48 195.3 98 98.0
FvH4_5g06741 Fragaria vesca HOM05D000811 ORTHO05D001558 2.2e-12 77.4 55 70.9
FAN09G2498 Fragaria x ananassa HOM05D029000 ORTHO05D203648 2.8e-12 77.0 36 91.7
FAN08G1388 Fragaria x ananassa HOM05D000811 ORTHO05D001558 4.8e-12 76.3 55 69.1
FAN18G1383 Fragaria x ananassa HOM05D000811 ORTHO05D001558 1.8e-11 74.3 55 69.1
FAN21G2351 Fragaria x ananassa HOM05D029000 ORTHO05D205214 3.1e-11 73.6 32 96.9
FvH4_5g06742 Fragaria vesca HOM05D000811 ORTHO05D001558 5.3e-11 72.8 55 63.6
FAN08G2761 Fragaria x ananassa HOM05D000811 ORTHO05D001558 5.3e-11 72.8 55 63.6
MD14G1166700 Malus domestica HOM05D000811 ORTHO05D001558 1.5e-10 71.2 55 60.0
FAN04G2508 Fragaria x ananassa HOM05D000811 ORTHO05D001558 2.0e-10 70.9 55 61.8
RcHm_v2.0_Chr7g0191801 Rosa chinensis HOM05D000811 ORTHO05D001558 2.0e-10 70.9 55 61.8
FAN22G1450 Fragaria x ananassa HOM05D002050 ORTHO05D001949 4.5e-10 69.7 75 56.0
MD06G1160700 Malus domestica HOM05D000811 ORTHO05D001558 7.7e-10 68.9 55 58.2
MD06G1160900 Malus domestica HOM05D000811 ORTHO05D001558 1.0e-09 68.6 55 58.2
ECA232G0730 Erigeron canadensis HOM05D000811 ORTHO05D001558 1.7e-09 67.8 55 58.2
Lsat_1_v5_gn_4_78501 Lactuca sativa HOM05D000811 ORTHO05D001558 3.8e-09 66.6 55 56.4
Prupe.5G161000 Prunus persica HOM05D000811 ORTHO05D001558 5.0e-09 66.2 55 54.5
HanXRQChr16g0497591 Helianthus annuus HOM05D000811 ORTHO05D001558 8.5e-09 65.5 55 56.4
TPR.G6319 Trifolium pratense HOM05D000811 ORTHO05D001558 8.5e-09 65.5 55 58.2
PGR083G1008 Punica granatum HOM05D000811 ORTHO05D001558 1.4e-08 64.7 55 56.4
Glyma.04G190800 Glycine max HOM05D000811 ORTHO05D001558 1.9e-08 64.3 55 54.5
Eucgr.B00172 Eucalyptus grandis HOM05D000811 ORTHO05D001558 3.2e-08 63.5 55 56.4
MSTRG.23184 Avicennia marina HOM05D000811 ORTHO05D001558 4.2e-08 63.2 55 52.7
CSS0004251 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D001558 4.2e-08 63.2 55 54.5
Gohir.D07G059100 Gossypium hirsutum HOM05D000811 ORTHO05D001558 4.2e-08 63.2 55 52.7
Gohir.D07G059200 Gossypium hirsutum HOM05D000811 ORTHO05D001558 4.2e-08 63.2 55 52.7
Gorai.001G062600 Gossypium raimondii HOM05D000811 ORTHO05D001558 4.2e-08 63.2 55 52.7
Nitab4.5_0000510g0010 Nicotiana tabacum HOM05D000811 ORTHO05D001558 4.2e-08 63.2 58 46.6
Dinv38494 Davidia involucrata HOM05D000811 ORTHO05D001558 5.5e-08 62.8 55 50.9
Nitab4.5_0019028g0010 Nicotiana tabacum HOM05D000811 ORTHO05D001558 5.5e-08 62.8 55 49.1
Thecc.03G119200 Theobroma cacao HOM05D000811 ORTHO05D001558 5.5e-08 62.8 55 54.5
Cc04_g10780 Coffea canephora HOM05D000811 ORTHO05D001558 7.2e-08 62.4 55 50.9
TWI39G0916 Tripterygium wilfordii HOM05D000811 ORTHO05D001558 9.4e-08 62.0 55 52.7
Atru.chr1.927 Acer truncatum HOM05D000811 ORTHO05D001558 1.2e-07 61.6 53 58.5
Duzib205G1130 Durio zibethinus HOM05D000811 ORTHO05D001558 1.2e-07 61.6 55 52.7
Manes.14G056600 Manihot esculenta HOM05D000811 ORTHO05D001558 1.2e-07 61.6 55 50.9
Rhsim12G0170600 Rhododendron simsii HOM05D000811 ORTHO05D001558 1.2e-07 61.6 55 50.9
CAN.G472.55 Capsicum annuum HOM05D000811 ORTHO05D001558 1.6e-07 61.2 55 47.3
Medtr3g075380 Medicago truncatula HOM05D000811 ORTHO05D001558 1.6e-07 61.2 55 52.7
vmacro16692 Vaccinium macrocarpon HOM05D000811 ORTHO05D001558 1.6e-07 61.2 55 50.9
DCAR_021598 Daucus carota HOM05D000811 ORTHO05D001558 2.1e-07 60.8 55 50.9
QL10p005823 Quercus lobata HOM05D000811 ORTHO05D001558 2.1e-07 60.8 55 52.7
SalBow5G0692 Salvia bowleyana HOM05D000811 ORTHO05D001558 2.1e-07 60.8 55 50.9
SalBow5G0850 Salvia bowleyana HOM05D000811 ORTHO05D001558 2.1e-07 60.8 55 50.9
Aa31LG3G18940 Aethionema arabicum HOM05D000811 ORTHO05D001558 2.7e-07 60.5 53 54.7
AUR62025756 Chenopodium quinoa HOM05D000811 ORTHO05D001558 2.7e-07 60.5 58 50.0
Ca_16107_v3 Cicer arietinum L. HOM05D000811 ORTHO05D001558 2.7e-07 60.5 55 50.9
Ciclev10022366m.g Citrus clementina HOM05D000811 ORTHO05D001558 2.7e-07 60.5 52 55.8
COL.COLO4_04955 Corchorus olitorius HOM05D000811 ORTHO05D001558 2.7e-07 60.5 55 50.9
Glyma.08G315900 Glycine max HOM05D000811 ORTHO05D001558 2.7e-07 60.5 53 56.6
Phvul.009G170700 Phaseolus vulgaris HOM05D000811 ORTHO05D001558 2.7e-07 60.5 55 50.9
Sabra12G0065900 Salix brachista HOM05D000811 ORTHO05D001558 2.7e-07 60.5 55 52.7
Actinidia08844 Actinidia chinensis HOM05D000811 ORTHO05D001558 3.6e-07 60.1 55 49.1
CANSAT80G1232 Cannabis sativa HOM05D000811 ORTHO05D001558 3.6e-07 60.1 55 50.9
Glyma.14G023900 Glycine max HOM05D000811 ORTHO05D001558 3.6e-07 60.1 53 54.7
PSO210G7505 Papaver somniferum HOM05D000811 ORTHO05D001558 3.6e-07 60.1 55 49.1
Solyc03g111720.3 Solanum lycopersicum HOM05D000811 ORTHO05D001558 3.6e-07 60.1 55 45.5
Aa31LG11G1820 Aethionema arabicum HOM05D000811 ORTHO05D001558 4.7e-07 59.7 53 56.6
Gohir.A07G054800 Gossypium hirsutum HOM05D000811 ORTHO05D001558 4.7e-07 59.7 55 49.1
Lj9A472T89 Lonicera japonica HOM05D000811 ORTHO05D001558 4.7e-07 59.7 55 49.1
MD01G1182900 Malus domestica HOM05D000811 ORTHO05D001558 4.7e-07 59.7 56 51.8
Peaxi162Scf00089g01021 Petunia axillaris HOM05D000811 ORTHO05D001558 4.7e-07 59.7 53 49.1
Psat5g117240 Pisum sativum HOM05D000811 ORTHO05D001558 4.7e-07 59.7 55 52.7
Lj1A974G33 Lonicera japonica HOM05D000811 ORTHO05D001558 6.1e-07 59.3 53 54.7
MD07G1247100 Malus domestica HOM05D000811 ORTHO05D001558 6.1e-07 59.3 53 54.7
Manes.06G130400 Manihot esculenta HOM05D000811 ORTHO05D001558 6.1e-07 59.3 53 54.7
Potri.015G087600 Populus trichocarpa HOM05D000811 ORTHO05D001558 6.1e-07 59.3 55 50.9
RcHm_v2.0_Chr1g0373491 Rosa chinensis HOM05D000811 ORTHO05D001558 6.1e-07 59.3 53 56.6
Sopen03g030840 Solanum pennellii HOM05D000811 ORTHO05D001558 6.1e-07 59.3 55 43.6
Cfa009509 Carpinus fangiana HOM05D000811 ORTHO05D001558 7.9e-07 58.9 55 49.1
PGSC0003DMG400015228 Solanum tuberosum HOM05D000811 ORTHO05D001558 7.9e-07 58.9 55 45.5
SGA_v2.0_scaffold90G27787 Striga asiatica HOM05D000811 ORTHO05D001558 7.9e-07 58.9 53 52.8
Atru.chr9.969 Acer truncatum HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 50.9
AUR62001252 Chenopodium quinoa HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 50.9
Cc02_g04840 Coffea canephora HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 52.7
FAN10G1512 Fragaria x ananassa HOM05D000811 ORTHO05D001558 1.0e-06 58.5 56 53.6
Lalb_Chr04g0248441 Lupinus albus HOM05D000811 ORTHO05D001558 1.0e-06 58.5 53 50.9
Nn6g33790 Nelumbo nucifera HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 49.1
Hund18517 Selenicereus undatus HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 52.7
Hund18565 Selenicereus undatus HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 52.7
SGA_v2.0_scaffold60G20836 Striga asiatica HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 52.7
VMungo1309G2601 Vigna mungo HOM05D000811 ORTHO05D001558 1.0e-06 58.5 55 50.9
AT4G25130 Arabidopsis thaliana HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 54.7
Migut.O00216 Erythranthe guttata HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 50.9
Thhalv10025928m.g Eutrema salsugineum HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 54.7
FAN01G0368 Fragaria x ananassa HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 56.6
FAN03G2014 Fragaria x ananassa HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 56.6
Hma1.2p1_1014F.1_g248000 Hydrangea macrophylla HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 54.7
Hma1.2p1_1305F.1_g274556 Hydrangea macrophylla HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 54.7
Prupe.2G271200 Prunus persica HOM05D000811 ORTHO05D001558 1.4e-06 58.2 53 54.7
AL7G28020 Arabidopsis lyrata HOM05D000811 ORTHO05D001558 1.8e-06 57.8 53 54.7
MSTRG.8854 Avicennia marina HOM05D000811 ORTHO05D001558 1.8e-06 57.8 58 50.0
BcaB01g05699 Brassica carinata HOM05D000811 ORTHO05D001558 1.8e-06 57.8 53 52.8
AUR62018817 Chenopodium quinoa HOM05D000811 ORTHO05D001558 1.8e-06 57.8 56 48.2
MD01G1176300 Malus domestica HOM05D000811 ORTHO05D001558 1.8e-06 57.8 53 52.8
Ah.15g095440 Amaranthus hybridus HOM05D000811 ORTHO05D001558 2.3e-06 57.4 52 53.8
AUR62007186 Chenopodium quinoa HOM05D000811 ORTHO05D001558 2.3e-06 57.4 53 50.9
Glyma.02G290800 Glycine max HOM05D000811 ORTHO05D001558 2.3e-06 57.4 53 52.8
unitig_37.g12484 Utricularia gibba HOM05D000811 ORTHO05D001558 2.3e-06 57.4 55 52.7
Ah.12g053900 Amaranthus hybridus HOM05D000811 ORTHO05D001558 3.0e-06 57.0 55 50.9
EL10Ac7g18038 Beta vulgaris HOM05D000811 ORTHO05D001558 3.0e-06 57.0 55 49.1
BcaB01g05701 Brassica carinata HOM05D000811 ORTHO05D001558 3.0e-06 57.0 54 50.0
CSS0016963 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D001558 3.0e-06 57.0 55 50.9
Haze_22215 Corylus avellana HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 54.7
DCAR_020167 Daucus carota HOM05D000811 ORTHO05D001558 3.0e-06 57.0 55 54.5
Thhalv10014718m.g Eutrema salsugineum HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
FAN06G2980 Fragaria x ananassa HOM05D000811 ORTHO05D001558 3.0e-06 57.0 56 51.8
Gohir.A03G060500 Gossypium hirsutum HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
Gohir.D03G105550 Gossypium hirsutum HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
Gohir.D12G198700 Gossypium hirsutum HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
Gorai.003G111700 Gossypium raimondii HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
Gorai.008G213400 Gossypium raimondii HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
MD04G1132300 Malus domestica HOM05D000811 ORTHO05D001558 3.0e-06 57.0 56 48.2
Sp6g35400 Schrenkiella parvula HOM05D000811 ORTHO05D001558 3.0e-06 57.0 53 52.8
Aa31LG7G10500 Aethionema arabicum HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
arahy.Tifrunner.gnm1.ann1.57RHWF Arachis hypogaea HOM05D000811 ORTHO05D001558 3.9e-06 56.6 55 47.3
BcaB01g05700 Brassica carinata HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BcaB01g06040 Brassica carinata HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BcaB01g06042 Brassica carinata HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
A03p03290 Brassica napus HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
A03p03300 Brassica napus HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
A03p03310 Brassica napus HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
C03p03730 Brassica napus HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
C03p03750 Brassica napus HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BolC3t12909H Brassica oleracea HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BolC3t12910H Brassica oleracea HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BraA03t09680Z Brassica rapa HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BraA03t09681Z Brassica rapa HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BraA03t09682Z Brassica rapa HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
BraA03t09683Z Brassica rapa HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
Cpa.g.sc4.29 Carica papaya HOM05D000811 ORTHO05D001558 3.9e-06 56.6 55 49.1
FvH4_7g26800 Fragaria vesca HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 54.7
Gohir.A09G248700 Gossypium hirsutum HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
Gohir.D09G249700 Gossypium hirsutum HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
Gorai.006G274000 Gossypium raimondii HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 52.8
Nitab4.5_0004457g0010 Nicotiana tabacum HOM05D000811 ORTHO05D001558 3.9e-06 56.6 58 46.6
Potri.015G112268 Populus trichocarpa HOM05D000811 ORTHO05D001558 3.9e-06 56.6 53 54.7
Sc22g0004210 Simmondsia chinensis HOM05D000811 ORTHO05D001558 3.9e-06 56.6 55 50.9
arahy.Tifrunner.gnm1.ann1.4A36F8 Arachis hypogaea HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 47.3
A03p03280 Brassica napus HOM05D000811 ORTHO05D001558 5.1e-06 56.2 53 50.9
CSS0001879 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 49.1
CSS0024809 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 49.1
Ciclev10005637m.g Citrus clementina HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 49.1
MELO3C017632.2 Cucumis melo HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 49.1
Nitab4.5_0001293g0010 Nicotiana tabacum HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 49.1
Nitab4.5_0002359g0030 Nicotiana tabacum HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 50.9
Nitab4.5_0003321g0060 Nicotiana tabacum HOM05D000811 ORTHO05D001558 5.1e-06 56.2 55 50.9
Potri.012G091100 Populus trichocarpa HOM05D000811 ORTHO05D001558 5.1e-06 56.2 52 51.9
QL09p027654 Quercus lobata HOM05D000811 ORTHO05D001558 5.1e-06 56.2 53 52.8
MSTRG.27227 Avicennia marina HOM05D000811 ORTHO05D001558 6.7e-06 55.8 55 50.9
BcaB01g06041 Brassica carinata HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 50.9
C03p03740 Brassica napus HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 50.9
CARHR232520 Cardamine hirsuta HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
CDE02G2712 Ceratophyllum demersum HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
CsaV3_4G004340 Cucumis sativus L. HOM05D000811 ORTHO05D001558 6.7e-06 55.8 55 49.1
Eucgr.A02929 Eucalyptus grandis HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
Lalb_Chr11g0069951 Lupinus albus HOM05D000811 ORTHO05D001558 6.7e-06 55.8 55 47.3
Lalb_Chr23g0273441 Lupinus albus HOM05D000811 ORTHO05D001558 6.7e-06 55.8 55 50.9
Nitab4.5_0001812g0070 Nicotiana tabacum HOM05D000811 ORTHO05D001558 6.7e-06 55.8 55 43.6
Potri.012G115800 Populus trichocarpa HOM05D000811 ORTHO05D001558 6.7e-06 55.8 54 53.7
Sp7g23130 Schrenkiella parvula HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
SGA_v2.0_scaffold44G16584 Striga asiatica HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
TAR629G0427 Trochodendron aralioides HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 52.8
VMungo0540G0274 Vigna mungo HOM05D000811 ORTHO05D001558 6.7e-06 55.8 53 50.9
Aqoxy3G01367 Aquilegia oxysepala HOM05D000811 ORTHO05D001558 8.8e-06 55.5 52 50.0
Aqoxy7G00867 Aquilegia oxysepala HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
AL6G17760 Arabidopsis lyrata HOM05D000811 ORTHO05D001558 8.8e-06 55.5 54 50.0
BcaB01g04540 Brassica carinata HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
BcaB01g06043 Brassica carinata HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
BcaB06g26425 Brassica carinata HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
BolC3t12911H Brassica oleracea HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
CiPaw.08G042300 Carya illinoinensis HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 52.8
COL.COLO4_37318 Corchorus olitorius HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 50.9
Duzib205G1905 Durio zibethinus HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 52.8
HanXRQChr05g0144371 Helianthus annuus HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 52.8
Lalb_Chr17g0348471 Lupinus albus HOM05D000811 ORTHO05D001558 8.8e-06 55.5 53 47.2
MBI10_g03805_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D001558 8.8e-06 55.5 55 49.1


User provided reference genes

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