Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 4.3e-49 197.6 95 100.0
FAN12G2439 Fragaria x ananassa HOM05D003413 ORTHO05D004197 4.3e-49 197.6 95 100.0
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 9.7e-49 196.4 95 98.9
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 9.7e-49 196.4 95 98.9
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 4.8e-48 194.1 95 97.9
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 4.5e-46 187.6 95 93.7
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 7.7e-46 186.8 95 93.7
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 7.7e-46 186.8 95 93.7
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 7.7e-46 186.8 95 93.7
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 1.0e-45 186.4 95 92.6
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 2.2e-45 185.3 95 92.6
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 2.9e-45 184.9 95 92.6
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 8.5e-45 183.3 95 92.6
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 8.5e-45 183.3 95 92.6
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.4e-44 182.6 94 92.6
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 4.2e-44 181.0 94 90.4
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 4.2e-44 181.0 94 90.4
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 4.2e-44 181.0 95 90.5
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 4.2e-44 181.0 94 90.4
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.2e-44 181.0 95 91.6
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 4.2e-44 181.0 94 90.4
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 4.2e-44 181.0 94 91.5
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 5.5e-44 180.6 95 91.6
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 7.2e-44 180.3 90 93.3
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 9.4e-44 179.9 94 90.4
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 9.4e-44 179.9 94 90.4
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 1.2e-43 179.5 94 90.4
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 1.2e-43 179.5 91 92.3
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.2e-43 179.5 94 90.4
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 1.2e-43 179.5 94 90.4
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 1.6e-43 179.1 91 93.4
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 2.1e-43 178.7 93 91.4
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 2.1e-43 178.7 94 90.4
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 2.1e-43 178.7 94 90.4
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 2.1e-43 178.7 94 90.4
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 2.7e-43 178.3 94 89.4
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 2.7e-43 178.3 94 89.4
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 4.6e-43 177.6 94 89.4
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 4.6e-43 177.6 94 89.4
Lalb_Chr06g0172271 Lupinus albus HOM05D003413 ORTHO05D004197 4.6e-43 177.6 94 89.4
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 4.6e-43 177.6 94 89.4
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 6.1e-43 177.2 94 90.4
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 6.1e-43 177.2 94 89.4
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 7.9e-43 176.8 95 88.4
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 7.9e-43 176.8 95 88.4
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 7.9e-43 176.8 94 88.3
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.0e-42 176.4 89 92.1
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 1.0e-42 176.4 90 91.1
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 1.8e-42 175.6 94 88.3
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 1.8e-42 175.6 96 87.5
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 2.3e-42 175.3 94 88.3
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 2.3e-42 175.3 93 90.3
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 2.3e-42 175.3 94 89.4
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 3.0e-42 174.9 94 89.4
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 3.0e-42 174.9 94 89.4
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 3.0e-42 174.9 94 89.4
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 3.0e-42 174.9 94 89.4
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 3.9e-42 174.5 94 87.2
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 3.9e-42 174.5 89 92.1
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 3.9e-42 174.5 92 89.1
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 5.1e-42 174.1 94 88.3
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 6.7e-42 173.7 90 90.0
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 6.7e-42 173.7 94 88.3
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 6.7e-42 173.7 94 88.3
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 6.7e-42 173.7 94 87.2
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 6.7e-42 173.7 90 88.9
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 6.7e-42 173.7 93 86.0
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 8.8e-42 173.3 91 87.9
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 8.8e-42 173.3 96 87.5
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.1e-41 172.9 90 90.0
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 1.1e-41 172.9 89 92.1
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.1e-41 172.9 93 88.2
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 1.1e-41 172.9 89 92.1
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 1.5e-41 172.6 96 85.4
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.5e-41 172.6 89 91.0
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 1.5e-41 172.6 89 91.0
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 1.5e-41 172.6 90 90.0
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 1.5e-41 172.6 94 87.2
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 2.0e-41 172.2 89 89.9
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 2.0e-41 172.2 95 86.3
Sopen03g016110 Solanum pennellii HOM05D003413 ORTHO05D004197 2.6e-41 171.8 94 87.2
MELO3C011880.2 Cucumis melo HOM05D003413 ORTHO05D004197 3.3e-41 171.4 90 90.0
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 3.3e-41 171.4 90 86.7
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 4.4e-41 171.0 92 87.0
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 4.4e-41 171.0 92 87.0
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 4.4e-41 171.0 92 87.0
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 4.4e-41 171.0 94 86.2
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 4.4e-41 171.0 89 89.9
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 4.4e-41 171.0 92 87.0
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 5.7e-41 170.6 94 85.1
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 5.7e-41 170.6 92 87.0
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 7.4e-41 170.2 90 88.9
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 7.4e-41 170.2 89 88.8
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 7.4e-41 170.2 94 84.0
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 7.4e-41 170.2 94 84.0
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 9.7e-41 169.9 90 88.9
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 9.7e-41 169.9 94 86.2
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 9.7e-41 169.9 89 88.8
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 9.7e-41 169.9 89 87.6
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 1.3e-40 169.5 90 85.6
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 1.7e-40 169.1 94 84.0
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 1.7e-40 169.1 94 84.0
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.2e-40 168.7 92 83.7
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 2.8e-40 168.3 92 85.9
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 2.8e-40 168.3 92 85.9
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 2.8e-40 168.3 92 85.9
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 2.8e-40 168.3 92 85.9
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 2.8e-40 168.3 94 85.1
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 3.7e-40 167.9 94 84.0
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 3.7e-40 167.9 89 86.5
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 3.7e-40 167.9 90 87.8
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 4.8e-40 167.5 92 85.9
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 6.3e-40 167.2 92 85.9
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 6.3e-40 167.2 92 84.8
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 6.3e-40 167.2 94 81.9
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 6.3e-40 167.2 94 83.0
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 8.2e-40 166.8 89 87.6
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 8.2e-40 166.8 94 85.1
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 1.1e-39 166.4 94 81.9
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 1.4e-39 166.0 92 84.8
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 1.4e-39 166.0 92 84.8
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 1.4e-39 166.0 92 84.8
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 1.4e-39 166.0 92 84.8
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.8e-39 165.6 89 86.5
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 1.8e-39 165.6 94 80.9
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 1.8e-39 165.6 89 85.4
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 2.4e-39 165.2 89 86.5
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 3.1e-39 164.9 92 84.8
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 4.1e-39 164.5 92 82.6
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 5.3e-39 164.1 126 68.3
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 6.9e-39 163.7 93 84.9
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 6.9e-39 163.7 93 84.9
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 6.9e-39 163.7 92 83.7
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 6.9e-39 163.7 94 81.9
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 9.1e-39 163.3 92 82.6
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-38 162.9 92 83.7
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 1.2e-38 162.9 89 85.4
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 2.0e-38 162.2 89 85.4
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 3.4e-38 161.4 90 84.4
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 7.7e-38 160.2 95 78.9
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 1.0e-37 159.8 94 80.9
Actinidia09660 Actinidia chinensis HOM05D003413 ORTHO05D004197 2.2e-37 158.7 90 83.3
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 2.2e-37 158.7 115 70.4
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 2.9e-37 158.3 94 77.7
Psat6g126880 Pisum sativum HOM05D003413 ORTHO05D004197 2.9e-37 158.3 90 80.0
AagrBONN_evm.TU.Sc2ySwM_117.841 Anthoceros agrestis HOM05D003413 ORTHO05D004197 1.4e-36 156.0 89 80.9
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 4.2e-36 154.5 94 79.8
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 2.1e-35 152.1 91 79.1
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 4.7e-35 151.0 88 77.3
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 7.9e-35 150.2 91 80.2
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 7.9e-35 150.2 78 88.5
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 1.4e-34 149.4 91 80.2
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 1.8e-34 149.1 95 78.9
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 1.8e-34 149.1 93 76.3
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 3.9e-34 147.9 92 75.0
Solyc03g063420.2 Solanum lycopersicum HOM05D003413 ORTHO05D004197 5.2e-34 147.5 115 67.0
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 1.1e-33 146.4 95 70.5
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 1.0e-29 133.3 95 67.4
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 2.2e-29 132.1 80 76.2
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 2.9e-29 131.7 95 66.3
Hma1.2p1_0531F.1_g173410 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 2.9e-29 131.7 85 72.9
Hma1.2p1_0458F.1_g157100 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 3.8e-29 131.3 76 78.9
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 5.2e-26 120.9 76 73.7
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 8.8e-26 120.2 70 82.9
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 9.7e-25 116.7 77 67.5
QL03p054247 Quercus lobata HOM05D003413 ORTHO05D004197 4.1e-23 111.3 93 62.4
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 9.1e-23 110.2 130 47.7
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 4.2e-20 101.3 74 63.5
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 1.2e-19 99.8 51 92.2
BraA01t00949Z Brassica rapa HOM05D003413 ORTHO05D004197 1.2e-19 99.8 51 92.2
BraA03t11858Z Brassica rapa HOM05D003413 ORTHO05D004197 1.2e-19 99.8 51 92.2
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 2.1e-19 99.0 51 88.2
HanXRQChr06g0180701 Helianthus annuus HOM05D003413 ORTHO05D004197 4.0e-18 94.7 50 84.0
Psat6g126800 Pisum sativum HOM05D003413 ORTHO05D004197 7.5e-17 90.5 89 52.8
RcHm_v2.0_Chr5g0003071 Rosa chinensis HOM05D003413 ORTHO05D029654 9.2e-07 57.0 77 36.4
MBI04_g47462_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 3.5e-06 55.1 24 91.7


User provided reference genes

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