Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 7.5e-50 200.3 106 100.0
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.5e-50 200.3 106 100.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-48 196.4 106 98.1
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-47 193.0 106 96.2
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-47 193.0 106 96.2
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.0e-47 192.2 106 96.2
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 3.5e-47 191.4 106 95.3
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 7.7e-47 190.3 106 97.2
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 7.0e-40 167.2 106 81.1
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 2.9e-38 161.8 106 76.4
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 3.3e-37 158.3 105 77.1
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 4.3e-37 157.9 106 75.5
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 3.6e-36 154.8 105 74.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 3.6e-36 154.8 105 74.3
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.1e-36 154.1 105 73.3
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 8.0e-36 153.7 106 76.4
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.0e-35 153.3 114 71.9
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.0e-35 153.3 105 72.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 1.0e-35 153.3 106 73.6
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.4e-35 152.9 106 75.5
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.4e-35 152.9 103 75.7
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 2.3e-35 152.1 105 74.3
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 4.0e-35 151.4 105 72.4
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 8.9e-35 150.2 116 68.1
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 8.9e-35 150.2 105 72.4
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.2e-34 149.8 103 72.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 1.2e-34 149.8 106 70.8
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.5e-34 149.4 106 71.7
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 4.4e-34 147.9 106 72.6
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 5.7e-34 147.5 105 71.4
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 5.7e-34 147.5 105 71.4
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 7.5e-34 147.1 103 69.9
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 7.5e-34 147.1 103 69.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.5e-34 147.1 103 69.9
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.7e-33 146.0 106 71.7
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 2.2e-33 145.6 103 69.9
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 2.2e-33 145.6 103 68.9
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.9e-33 145.2 108 70.4
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 4.9e-33 144.4 103 69.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.9e-33 144.4 119 66.4
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.4e-33 144.1 105 67.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.4e-33 144.1 106 71.7
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 1.1e-32 143.3 105 70.5
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.4e-32 142.9 103 68.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 71.0
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.8e-32 142.5 106 69.8
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.4e-32 142.1 106 68.9
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 68.6
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 3.2e-32 141.7 108 67.6
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 3.2e-32 141.7 106 68.9
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 3.2e-32 141.7 103 67.0
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.1e-32 141.4 107 71.0
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 4.1e-32 141.4 107 68.2
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 4.1e-32 141.4 109 67.9
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 7.0e-32 140.6 94 74.5
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 9.2e-32 140.2 106 66.0
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.5e-31 138.3 105 65.7
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 4.6e-31 137.9 91 76.9
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 5.9e-31 137.5 107 68.2
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 5.9e-31 137.5 103 68.0
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 5.9e-31 137.5 103 68.0
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 5.9e-31 137.5 106 67.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 7.8e-31 137.1 106 65.1
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 7.8e-31 137.1 105 68.6
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 7.8e-31 137.1 103 67.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.8e-31 137.1 107 66.4
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 106 65.1
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 84 77.4
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 65.1
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.7e-30 136.0 106 66.0
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.3e-30 135.6 105 67.6
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 2.3e-30 135.6 90 75.6
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 64.5
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 66.4
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 5.0e-30 134.4 107 69.2
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 64.2
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.0e-30 134.4 106 63.2
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 63.2
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 63.2
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 8.6e-30 133.7 106 63.2
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 8.6e-30 133.7 87 71.3
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.1e-29 133.3 106 63.2
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.1e-29 133.3 106 63.2
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 65.4
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 96 65.6
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.9e-29 132.5 105 62.9
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.9e-29 132.5 106 65.1
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 62.3
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 66.4
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 66.4
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.3e-29 131.7 106 63.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 64.2
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 65.4
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.3e-29 131.3 103 64.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 5.6e-29 131.0 105 59.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 7.3e-29 130.6 106 61.3
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 103 64.1
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 2.1e-28 129.0 106 60.4
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.8e-28 128.6 127 57.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 4.7e-28 127.9 106 63.2
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 6.2e-28 127.5 93 72.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 1.0e-27 126.7 102 61.8
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.0e-27 126.7 125 56.0
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.0e-27 124.8 106 63.2
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 6.8e-27 124.0 86 69.8
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.2e-26 123.2 99 60.6
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.2e-26 123.2 96 62.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.6e-26 122.1 93 67.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.5e-26 120.6 105 59.0
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 7.5e-26 120.6 105 59.0
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 7.5e-26 120.6 91 67.0
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 9.8e-26 120.2 96 61.5
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.9e-25 117.9 89 62.9
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 4.9e-25 117.9 107 56.1
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 4.9e-25 117.9 103 57.3
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.9e-25 117.9 107 59.8
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 8.3e-25 117.1 105 57.1
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.4e-24 116.3 89 66.3
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.4e-24 114.4 106 56.6
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 9.2e-24 113.6 105 56.2
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.6e-23 112.8 95 61.1
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.0e-23 112.5 103 60.2
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.6e-23 111.3 103 59.2
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.0e-22 110.2 102 57.8
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 6.6e-22 107.5 104 53.8
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.6e-22 107.1 90 60.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 8.6e-22 107.1 103 56.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.9e-21 105.9 92 62.0
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 3.3e-21 105.1 74 74.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.6e-20 102.8 74 70.3
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 6.8e-19 97.4 74 68.9
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.6e-18 95.5 73 67.1
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-16 90.1 63 71.4
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.9e-16 89.4 62 75.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.9e-16 89.4 83 55.4
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 2.1e-15 85.9 66 63.6
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 4.6e-15 84.7 104 45.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.8e-15 84.0 61 67.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 1.3e-14 83.2 73 60.3
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 8.6e-14 80.5 67 64.2
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.5e-13 79.7 100 45.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.9e-13 79.3 59 72.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.6e-10 68.9 70 64.3
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 7.6e-10 67.4 75 53.3
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 1.4e-08 63.2 42 83.3
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 9.2e-08 60.5 69 46.4


User provided reference genes

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