Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2403 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.4e-34 149.1 75 100.0
FAN12G2867 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.4e-34 149.1 75 100.0
FvH4_4g18840 Fragaria vesca HOM05D013646 ORTHO05D015661 8.2e-27 123.2 61 100.0
FAN07G2467 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.3e-19 99.4 72 75.0
FvH4_3g06550 Fragaria vesca HOM05D003121 ORTHO05D003535 1.1e-15 86.3 78 60.3
FvH4_3g23920 Fragaria vesca HOM05D003121 ORTHO05D003535 7.2e-15 83.6 75 61.3
FAN11G2297 Fragaria x ananassa HOM05D003121 ORTHO05D003535 7.2e-15 83.6 75 61.3
FAN11G3129 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.2e-14 82.8 75 60.0
FvH4_6g03220 Fragaria vesca HOM05D003121 ORTHO05D003535 6.1e-14 80.5 77 55.8
FAN02G1177 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.4e-13 79.3 77 54.5
FAN21G0422 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.3e-13 78.6 74 58.1
FAN14G3468 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.0e-12 75.5 79 54.4
TAR625G0403 Trochodendron aralioides HOM05D003121 ORTHO05D003535 2.0e-12 75.5 71 56.3
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.4e-12 74.7 74 59.5
FvH4_6g03710 Fragaria vesca HOM05D003121 ORTHO05D003535 4.4e-12 74.3 74 58.1
TAR376G0768 Trochodendron aralioides HOM05D003121 ORTHO05D003535 5.7e-12 73.9 71 54.9
FAN09G1988 Fragaria x ananassa HOM05D003121 ORTHO05D003535 7.5e-12 73.6 78 53.8
FAN05G0168 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.3e-11 72.8 74 58.1
Nn5g27768 Nelumbo nucifera HOM05D003121 ORTHO05D003535 2.8e-11 71.6 71 54.9
FvH4_6g03780 Fragaria vesca HOM05D003121 ORTHO05D003535 3.7e-11 71.2 71 57.7
FAN14G4574 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.7e-11 71.2 71 57.7
FAN17G2581 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.7e-11 71.2 49 77.6
Lj5P177T42 Lonicera japonica HOM05D003121 ORTHO05D003535 4.8e-11 70.9 71 52.1
EL10Ac6g13967 Beta vulgaris HOM05D003121 ORTHO05D003535 1.1e-10 69.7 77 51.9
PGR042G3155 Punica granatum HOM05D003121 ORTHO05D003535 1.1e-10 69.7 71 50.7
Glyma.10G283300 Glycine max HOM05D003121 ORTHO05D003535 1.4e-10 69.3 71 54.9
FAN05G5388 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.8e-10 68.9 71 56.3
FAN09G3057 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.8e-10 68.9 71 56.3
FvH4_2g26761 Fragaria vesca HOM05D003121 ORTHO05D003535 3.1e-10 68.2 75 53.3
Lsat_1_v5_gn_4_72000 Lactuca sativa HOM05D003121 ORTHO05D003535 4.1e-10 67.8 82 46.3
Glyma.20G106400 Glycine max HOM05D003121 ORTHO05D003535 5.3e-10 67.4 71 53.5
HanXRQChr10g0298091 Helianthus annuus HOM05D003121 ORTHO05D003535 5.3e-10 67.4 79 48.1
Prupe.8G168900 Prunus persica HOM05D003121 ORTHO05D003535 5.3e-10 67.4 68 54.4
Hund00013 Selenicereus undatus HOM05D003121 ORTHO05D003535 5.3e-10 67.4 68 52.9
VMungo0720G1452 Vigna mungo HOM05D003121 ORTHO05D003535 5.3e-10 67.4 68 55.9
vmacro13056 Vaccinium macrocarpon HOM05D003121 ORTHO05D003535 7.0e-10 67.0 69 53.6
EL10Ac9g21341 Beta vulgaris HOM05D003121 ORTHO05D003535 9.1e-10 66.6 83 49.4
CSS0021302 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 9.1e-10 66.6 68 52.9
Dinv41919 Davidia involucrata HOM05D003121 ORTHO05D003535 9.1e-10 66.6 71 52.1
ECA234G0462 Erigeron canadensis HOM05D003121 ORTHO05D003535 9.1e-10 66.6 82 47.6
PSO675G3506 Papaver somniferum HOM05D003121 ORTHO05D003535 9.1e-10 66.6 72 54.2
Rhsim01G0025300 Rhododendron simsii HOM05D003121 ORTHO05D003535 9.1e-10 66.6 67 53.7
Sc14g0002330 Simmondsia chinensis HOM05D003121 ORTHO05D003535 9.1e-10 66.6 68 52.9
ClCG02G003910 Citrullus lanatus HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 51.5
MELO3C013333.2 Cucumis melo HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 51.5
CsaV3_7G001220 Cucumis sativus L. HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 51.5
Medtr1g112910 Medicago truncatula HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 54.4
Sed0012540 Sechium edule HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 52.9
Sed0021457 Sechium edule HOM05D003121 ORTHO05D003535 1.2e-09 66.2 68 52.9
Hma1.2p1_0163F.1_g072700 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 1.6e-09 65.9 71 49.3
Phvul.007G017900 Phaseolus vulgaris HOM05D003121 ORTHO05D003535 1.6e-09 65.9 68 54.4
Solyc01g088730.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 1.6e-09 65.9 71 47.9
Sopen01g035570 Solanum pennellii HOM05D003121 ORTHO05D003535 1.6e-09 65.9 71 47.9
PGSC0003DMG401001724 Solanum tuberosum HOM05D003121 ORTHO05D003535 1.6e-09 65.9 71 47.9
BraA06t26383Z Brassica rapa HOM05D003121 ORTHO05D003535 2.0e-09 65.5 74 48.6
Eucgr.G01791 Eucalyptus grandis HOM05D003121 ORTHO05D003535 2.0e-09 65.5 71 50.7
Lj5g0004060 Lotus japonicus HOM05D003121 ORTHO05D003535 2.0e-09 65.5 68 52.9
PSO732G0110 Papaver somniferum HOM05D003121 ORTHO05D003535 2.0e-09 65.5 71 53.5
Psat6g232680 Pisum sativum HOM05D003121 ORTHO05D003535 2.0e-09 65.5 71 49.3
TPR.G2486 Trifolium pratense HOM05D003121 ORTHO05D003535 2.0e-09 65.5 71 49.3
C07p43950 Brassica napus HOM05D003121 ORTHO05D003535 2.7e-09 65.1 74 48.6
AUR62010012 Chenopodium quinoa HOM05D003121 ORTHO05D003535 2.7e-09 65.1 68 51.5
AUR62013002 Chenopodium quinoa HOM05D003121 ORTHO05D003535 2.7e-09 65.1 68 51.5
AUR62015153 Chenopodium quinoa HOM05D003121 ORTHO05D003535 2.7e-09 65.1 68 51.5
Ca_03297_v3 Cicer arietinum L. HOM05D003121 ORTHO05D003535 2.7e-09 65.1 71 49.3
Cc09_g10310 Coffea canephora HOM05D003121 ORTHO05D003535 2.7e-09 65.1 71 50.7
ECA236G3931 Erigeron canadensis HOM05D003121 ORTHO05D003535 2.7e-09 65.1 71 53.5
FvH4_6g40673 Fragaria vesca HOM05D003121 ORTHO05D003535 2.7e-09 65.1 76 53.9
FAN14G5171 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.7e-09 65.1 76 53.9
Hma1.2p1_0032F.1_g019220 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 2.7e-09 65.1 71 50.7
PSO541G2003 Papaver somniferum HOM05D003121 ORTHO05D003535 2.7e-09 65.1 68 51.5
PSO675G0341 Papaver somniferum HOM05D003121 ORTHO05D003535 2.7e-09 65.1 68 51.5
TWI60G0855 Tripterygium wilfordii HOM05D003121 ORTHO05D003535 2.7e-09 65.1 72 48.6
GSVIVG01037045001 Vitis vinifera HOM05D003121 ORTHO05D003535 2.7e-09 65.1 78 47.4
PSO210G5475 Papaver somniferum HOM05D003121 ORTHO05D003535 3.5e-09 64.7 68 52.9
A06p34540 Brassica napus HOM05D000059 ORTHO05D003535 4.5e-09 64.3 71 49.3
Lalb_Chr06g0163731 Lupinus albus HOM05D003121 ORTHO05D003535 4.5e-09 64.3 71 50.7
BolC7t44923H Brassica oleracea HOM05D003121 ORTHO05D003535 5.9e-09 63.9 71 49.3
CAN.G756.31 Capsicum annuum HOM05D003121 ORTHO05D003535 5.9e-09 63.9 71 47.9
Cpa.g.sc14.232 Carica papaya HOM05D003121 ORTHO05D003535 5.9e-09 63.9 79 45.6
Ciclev10030221m.g Citrus clementina HOM05D003121 ORTHO05D003535 5.9e-09 63.9 68 51.5
Migut.N01332 Erythranthe guttata HOM05D003121 ORTHO05D003535 5.9e-09 63.9 71 49.3
Nitab4.5_0000563g0090 Nicotiana tabacum HOM05D003121 ORTHO05D003535 5.9e-09 63.9 71 46.5
Nitab4.5_0002341g0030 Nicotiana tabacum HOM05D003121 ORTHO05D003535 5.9e-09 63.9 71 46.5
QL11p052350 Quercus lobata HOM05D003121 ORTHO05D003535 5.9e-09 63.9 82 48.8
RcHm_v2.0_Chr6g0278841 Rosa chinensis HOM05D003121 ORTHO05D003535 5.9e-09 63.9 76 50.0
SGA_v2.0_scaffold195G40810 Striga asiatica HOM05D003121 ORTHO05D003535 5.9e-09 63.9 68 50.0
unitig_746.g26872 Utricularia gibba HOM05D003121 ORTHO05D003535 5.9e-09 63.9 82 45.1
MSTRG.27630 Avicennia marina HOM05D003121 ORTHO05D003535 7.7e-09 63.5 71 47.9
CiPaw.02G071300 Carya illinoinensis HOM05D003121 ORTHO05D003535 7.7e-09 63.5 71 50.7
Manes.15G059200 Manihot esculenta HOM05D003121 ORTHO05D003535 7.7e-09 63.5 68 51.5
PSO223G0054 Papaver somniferum HOM05D003121 ORTHO05D003535 7.7e-09 63.5 68 52.9
Potri.009G138100 Populus trichocarpa HOM05D003121 ORTHO05D003535 7.7e-09 63.5 80 47.5
Sp2g23600 Schrenkiella parvula HOM05D003121 ORTHO05D003535 7.7e-09 63.5 71 49.3
THA.LOC104819658 Tarenaya hassleriana HOM05D003121 ORTHO05D003535 7.7e-09 63.5 71 49.3
AL6G34890 Arabidopsis lyrata HOM05D003121 ORTHO05D003535 1.0e-08 63.2 71 49.3
CANSAT80G1118 Cannabis sativa HOM05D003121 ORTHO05D003535 1.0e-08 63.2 70 51.4
Carub.0006s2137 Capsella rubella HOM05D003121 ORTHO05D003535 1.0e-08 63.2 71 49.3
Thhalv10004704m.g Eutrema salsugineum HOM05D003121 ORTHO05D003535 1.0e-08 63.2 71 49.3
PSO223G0032 Papaver somniferum HOM05D003121 ORTHO05D003535 1.0e-08 63.2 77 48.1
arahy.Tifrunner.gnm1.ann1.LP37DI Arachis hypogaea HOM05D003121 ORTHO05D003535 1.3e-08 62.8 68 50.0
CSS0049142 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 1.3e-08 62.8 68 48.5
FAN20G1288 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.3e-08 62.8 77 49.4
arahy.Tifrunner.gnm1.ann1.TJ1SRC Arachis hypogaea HOM05D003121 ORTHO05D003535 1.7e-08 62.4 68 50.0
CANSAT78G0282 Cannabis sativa HOM05D003121 ORTHO05D003535 1.7e-08 62.4 70 50.0
DCAR_022799 Daucus carota HOM05D003121 ORTHO05D003535 1.7e-08 62.4 71 47.9
FAN23G2561 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.7e-08 62.4 70 51.4
AUR62010208 Chenopodium quinoa HOM05D003121 ORTHO05D003535 2.2e-08 62.0 66 51.5
FvH4_2g15640 Fragaria vesca HOM05D003121 ORTHO05D003535 2.2e-08 62.0 77 49.4
FAN24G0024 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.2e-08 62.0 77 49.4
PSO135G0399 Papaver somniferum HOM05D003121 ORTHO05D003535 2.2e-08 62.0 68 50.0
Solyc04g015090.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 2.2e-08 62.0 72 47.2
Haze_00809 Corylus avellana HOM05D003121 ORTHO05D003535 2.9e-08 61.6 82 48.8
Duzib052G0361 Durio zibethinus HOM05D003121 ORTHO05D003535 2.9e-08 61.6 82 48.8
ECA240G2719 Erigeron canadensis HOM05D003121 ORTHO05D003535 2.9e-08 61.6 71 49.3
FvH4_1g17321 Fragaria vesca HOM05D003121 ORTHO05D003535 2.9e-08 61.6 70 50.0
FAN19G1977 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.9e-08 61.6 70 50.0
FAN21G2867 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.9e-08 61.6 71 49.3
Gorai.002G200100 Gossypium raimondii HOM05D003121 ORTHO05D003535 2.9e-08 61.6 82 47.6
PSO223G0083 Papaver somniferum HOM05D003121 ORTHO05D003535 2.9e-08 61.6 68 51.5
Sopen04g007110 Solanum pennellii HOM05D003121 ORTHO05D003535 2.9e-08 61.6 72 47.2
PGSC0003DMG400015012 Solanum tuberosum HOM05D003121 ORTHO05D003535 2.9e-08 61.6 72 47.2
Thecc.02G055800 Theobroma cacao HOM05D003121 ORTHO05D003535 2.9e-08 61.6 82 48.8
Actinidia39167 Actinidia chinensis HOM05D003121 ORTHO05D003535 3.8e-08 61.2 68 48.5
CAN.G475.3 Capsicum annuum HOM05D003121 ORTHO05D003535 3.8e-08 61.2 68 48.5
Peaxi162Scf00793g00345 Petunia axillaris HOM05D003121 ORTHO05D003535 3.8e-08 61.2 68 48.5
Sabra09G0107000 Salix brachista HOM05D003121 ORTHO05D003535 3.8e-08 61.2 80 46.2
FAN16G1234 Fragaria x ananassa HOM05D003121 ORTHO05D003535 5.0e-08 60.8 73 47.9
MD05G1124900 Malus domestica HOM05D003121 ORTHO05D003535 5.0e-08 60.8 71 50.7
AT5G23590 Arabidopsis thaliana HOM05D003121 ORTHO05D003535 6.5e-08 60.5 71 47.9
SGA_v2.0_scaffold207G41938 Striga asiatica HOM05D003121 ORTHO05D003535 6.5e-08 60.5 68 47.1
Aa31LG10G14410 Aethionema arabicum HOM05D003121 ORTHO05D003535 8.5e-08 60.1 71 46.5
Aqoxy7G02828 Aquilegia oxysepala HOM05D003121 ORTHO05D003535 8.5e-08 60.1 85 44.7
CSS0039474 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 8.5e-08 60.1 68 47.1
FvH4_3g08280 Fragaria vesca HOM05D003121 ORTHO05D003535 8.5e-08 60.1 81 45.7
FAN11G1820 Fragaria x ananassa HOM05D003121 ORTHO05D003535 8.5e-08 60.1 81 45.7
Gohir.A01G170400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 8.5e-08 60.1 81 48.1
Gohir.D01G161400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 8.5e-08 60.1 82 46.3
Solyc12g056890.1 Solanum lycopersicum HOM05D003121 ORTHO05D003535 8.5e-08 60.1 72 45.8
COL.COLO4_17374 Corchorus olitorius HOM05D003121 ORTHO05D003535 1.5e-07 59.3 68 50.0
DCAR_029977 Daucus carota HOM05D003121 ORTHO05D003535 1.5e-07 59.3 68 47.1
CDE02G2638 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 1.9e-07 58.9 75 46.7
MBI15_g18375_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 1.9e-07 58.9 67 46.3
CARHR189980 Cardamine hirsuta HOM05D003121 ORTHO05D003535 2.5e-07 58.5 71 47.9
CDE09G1210 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 2.5e-07 58.5 75 46.7
Peaxi162Scf00444g00017 Petunia axillaris HOM05D003121 ORTHO05D003535 3.2e-07 58.2 68 47.1
DCAR_020020 Daucus carota HOM05D003121 ORTHO05D003535 4.2e-07 57.8 80 40.0
FvH4_3g08271 Fragaria vesca HOM05D003121 ORTHO05D003535 4.2e-07 57.8 78 44.9
HanXRQChr02g0035631 Helianthus annuus HOM05D003121 ORTHO05D003535 4.2e-07 57.8 71 46.5
FAN26G1946 Fragaria x ananassa HOM05D003121 ORTHO05D003535 5.5e-07 57.4 68 48.5
PSO339G5273 Papaver somniferum HOM05D003121 ORTHO05D003535 5.5e-07 57.4 68 48.5
CANSAT25G2722 Cannabis sativa HOM05D003121 ORTHO05D003535 7.2e-07 57.0 71 45.1
SHI04584 Sapria himalayana HOM05D003121 ORTHO05D003535 1.2e-06 56.2 68 45.6
PGSC0003DMG400009335 Solanum tuberosum HOM05D003121 ORTHO05D003535 1.2e-06 56.2 68 44.1
Hund16712 Selenicereus undatus HOM05D003121 ORTHO05D003535 1.6e-06 55.8 87 42.5
Lsat_1_v5_gn_4_71980 Lactuca sativa HOM05D003121 ORTHO05D003535 2.1e-06 55.5 52 53.8
PGSC0003DMG401018151 Solanum tuberosum HOM05D003121 ORTHO05D003535 2.1e-06 55.5 72 41.7
FvH4_6g22510 Fragaria vesca HOM05D003121 ORTHO05D003535 2.7e-06 55.1 70 45.7
FAN05G2525 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.7e-06 55.1 70 45.7
FAN05G3028 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.7e-06 55.1 70 45.7
FAN14G0526 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.7e-06 55.1 70 45.7
FAN26G0110 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.7e-06 55.1 70 42.9
Aqoxy2G02472 Aquilegia oxysepala HOM05D003121 ORTHO05D003535 3.6e-06 54.7 41 68.3
FAN02G3834 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.6e-06 54.7 70 45.7
FAN13G2513 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.6e-06 54.7 68 47.1
Os03g0136800 Oryza sativa ssp. japonica HOM05D003121 ORTHO05D003535 3.6e-06 54.7 85 43.5
SEGI_06864 Sequoiadendron giganteum HOM05D003121 ORTHO05D003535 3.6e-06 54.7 67 43.3
FAN28G1504 Fragaria x ananassa HOM05D003121 ORTHO05D003535 6.1e-06 53.9 55 52.7
Zm00001eb002940 Zea mays HOM05D003121 ORTHO05D003535 6.1e-06 53.9 78 42.3


User provided reference genes

Program Settings