Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.3e-87 326.2 151 100.0
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.6e-77 291.2 142 95.8
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.0e-77 290.8 142 95.1
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 3.0e-76 288.5 156 88.5
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 7.8e-69 263.8 130 95.4
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 7.6e-56 220.7 133 72.9
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.7e-55 219.5 130 73.1
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.7e-55 219.5 133 72.9
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.9e-55 218.8 133 71.4
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 3.8e-55 218.4 133 70.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.8e-55 218.4 130 71.5
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.8e-55 218.4 131 74.8
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 8.4e-55 217.2 146 68.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 8.4e-55 217.2 130 74.6
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.9e-54 216.1 144 66.7
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.2e-54 214.9 133 70.7
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.2e-54 214.9 133 69.9
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 9.3e-54 213.8 138 71.7
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 9.3e-54 213.8 133 67.7
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.2e-53 213.4 134 70.9
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.2e-53 213.4 134 70.9
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 1.2e-53 213.4 130 72.3
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-53 213.0 133 69.2
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.6e-53 213.0 148 68.9
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.6e-53 213.0 148 68.9
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.7e-53 212.2 133 69.2
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.5e-53 211.8 136 69.9
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.6e-53 211.5 135 68.9
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 6.0e-53 211.1 128 71.9
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 6.0e-53 211.1 133 69.9
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 7.9e-53 210.7 133 70.7
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 7.9e-53 210.7 134 69.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.0e-52 210.3 127 70.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.3e-52 209.1 128 71.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.0e-52 208.8 131 71.0
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 3.9e-52 208.4 133 68.4
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 3.9e-52 208.4 133 68.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.9e-52 208.4 133 68.4
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 3.9e-52 208.4 146 64.4
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.9e-52 208.4 148 66.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.9e-52 208.4 133 69.2
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 5.1e-52 208.0 128 70.3
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 5.1e-52 208.0 134 67.2
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.1e-52 208.0 148 64.9
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 8.7e-52 207.2 123 74.8
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 8.7e-52 207.2 136 71.3
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 8.7e-52 207.2 131 70.2
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 1.1e-51 206.8 136 70.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 1.5e-51 206.5 145 66.2
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.5e-51 206.5 131 70.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 1.9e-51 206.1 133 68.4
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 2.5e-51 205.7 127 69.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.5e-51 205.7 130 69.2
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.3e-51 204.9 131 69.5
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 5.6e-51 204.5 133 66.9
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 5.6e-51 204.5 133 66.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 7.4e-51 204.1 131 70.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.4e-51 204.1 149 63.1
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 9.6e-51 203.8 122 72.1
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 9.6e-51 203.8 123 70.7
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 9.6e-51 203.8 150 64.7
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.3e-50 203.4 133 66.9
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.8e-50 202.2 133 66.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 3.7e-50 201.8 149 63.8
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 3.7e-50 201.8 149 64.4
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 4.8e-50 201.4 147 61.9
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.2e-50 201.1 147 60.5
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 6.2e-50 201.1 149 63.8
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 8.1e-50 200.7 147 62.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.4e-49 199.9 133 66.2
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-49 199.9 133 67.7
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.4e-49 199.9 133 67.7
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.4e-49 199.9 150 60.0
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.8e-49 199.5 135 66.7
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.8e-49 199.5 135 66.7
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.8e-49 199.5 136 66.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.1e-49 198.7 147 59.9
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.1e-49 198.7 133 67.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 5.3e-49 198.0 159 57.2
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 1.2e-48 196.8 138 65.2
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 2.6e-48 195.7 146 60.3
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 2.6e-48 195.7 149 62.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.6e-48 195.7 131 67.9
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 4.5e-48 194.9 132 67.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 4.5e-48 194.9 141 63.8
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.0e-47 193.7 147 59.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.0e-47 193.7 139 63.3
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.3e-47 193.4 130 69.2
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.3e-47 193.4 130 66.2
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.3e-47 193.4 119 70.6
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.7e-47 193.0 147 63.3
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-47 192.6 151 58.9
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.8e-47 191.8 140 62.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.1e-46 190.3 133 63.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 9.3e-46 187.2 149 59.1
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 9.3e-46 187.2 137 63.5
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.6e-45 186.4 130 65.4
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.6e-45 186.4 135 64.4
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.1e-45 186.0 152 57.9
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.0e-45 184.5 134 62.7
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 7.9e-45 184.1 132 64.4
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.0e-44 182.2 134 61.9
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.1e-44 181.4 134 61.9
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.5e-43 179.1 108 71.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.5e-43 179.1 108 71.3
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 7.4e-43 177.6 138 62.3
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.3e-42 176.8 112 69.6
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 6.3e-42 174.5 152 53.3
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 4.1e-41 171.8 148 56.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 6.5e-39 164.5 153 52.9
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.0e-36 157.1 158 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.8e-36 156.4 117 57.3
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.8e-36 156.4 118 60.2
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 3.3e-35 152.1 124 53.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.4e-33 146.7 173 45.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.2e-32 143.7 149 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 6.5e-31 137.9 145 49.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.2e-24 117.1 87 58.6
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 4.2e-22 108.6 72 69.4
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 8.8e-20 100.9 105 53.3
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 2.2e-18 96.3 53 75.5
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 6.3e-18 94.7 53 73.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-17 92.0 66 60.6
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.0e-16 89.7 94 50.0
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-15 87.4 80 55.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 5.0e-15 85.1 79 54.4
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 8.5e-15 84.3 102 45.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.5e-14 83.6 60 63.3
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.9e-14 83.2 79 54.4
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 5.5e-14 81.6 108 40.7
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.4e-12 77.0 43 74.4
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.8e-12 76.6 52 65.4
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.0e-11 73.2 71 49.3
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 2.8e-10 69.3 40 65.0
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.8e-10 69.3 73 47.9
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-09 66.6 72 47.2
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.8e-09 66.6 72 47.2
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.4e-09 66.2 73 46.6
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 3.5e-08 62.4 113 39.8
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.0e-07 60.8 41 73.2
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 7.2e-06 54.7 48 50.0
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 9.4e-06 54.3 48 47.9


User provided reference genes

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