Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 0.0e+00 1120.1 615 100.0
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 0.0e+00 1110.1 616 99.4
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 0.0e+00 1083.2 615 96.7
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 0.0e+00 1076.6 641 92.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.6e-298 1028.9 615 91.9
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.9e-295 1018.1 634 87.5
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 6.8e-212 741.1 628 68.6
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 2.5e-174 616.3 559 66.4
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.5e-171 607.1 642 55.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 6.7e-167 591.7 641 56.3
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 3.3e-166 589.3 633 54.8
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 5.7e-166 588.6 635 55.9
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.9e-162 576.2 631 55.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.6e-160 570.5 637 54.5
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 2.1e-160 570.1 637 52.7
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.6e-160 568.9 639 53.2
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.4e-159 567.4 642 52.2
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 6.7e-159 565.1 636 53.1
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 1.9e-158 563.5 638 52.5
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 2.5e-158 563.1 636 53.3
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 3.3e-158 562.8 635 53.7
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.8e-151 540.4 643 53.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 3.0e-151 539.7 647 50.4
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 7.4e-150 535.0 639 49.6
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 7.4e-150 535.0 640 51.4
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.7e-149 533.9 630 52.4
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.7e-149 532.7 661 49.8
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 6.3e-149 531.9 650 48.9
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.4e-148 530.8 630 51.0
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.4e-148 530.0 641 52.3
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 3.1e-148 529.6 622 53.2
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.5e-147 527.3 621 50.7
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 5.9e-147 525.4 640 50.9
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.0e-146 524.6 646 49.7
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 3.2e-145 519.6 648 49.4
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.1e-144 516.9 664 48.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.8e-141 505.8 640 48.9
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.0e-138 498.0 628 48.6
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 8.5e-138 495.0 635 47.7
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 9.4e-137 491.5 641 49.1
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.2e-136 491.1 625 50.6
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.2e-136 491.1 638 46.4
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.6e-136 490.7 628 47.9
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 4.7e-136 489.2 652 48.5
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 3.0e-135 486.5 534 54.7
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 5.7e-134 482.3 648 48.3
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 7.5e-134 481.9 627 49.8
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.7e-133 480.7 606 49.2
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 7.0e-132 475.3 624 48.7
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 7.7e-131 471.9 632 48.4
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.0e-130 471.5 632 50.3
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 7.2e-129 465.3 638 46.7
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.6e-126 456.8 665 43.2
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 1.8e-124 450.7 588 49.3
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 9.1e-124 448.4 470 62.3
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.5e-121 441.0 618 46.8
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.3e-121 439.9 627 44.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 5.7e-118 429.1 647 44.7
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 7.5e-118 428.7 619 44.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.8e-116 424.1 641 45.9
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 7.0e-116 422.2 621 44.6
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.0e-114 418.3 633 46.4
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.7e-114 417.5 636 46.4
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 2.9e-114 416.8 656 44.7
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 5.0e-114 416.0 630 46.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 4.3e-113 412.9 649 43.1
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 1.2e-112 411.4 637 43.2
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.2e-112 411.4 689 39.9
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 8.0e-112 408.7 622 46.3
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 3.0e-111 406.8 637 43.0
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.0e-110 404.1 629 43.7
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 5.8e-110 402.5 630 44.1
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 4.1e-108 396.4 671 42.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 7.8e-107 392.1 636 43.1
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.7e-106 391.0 619 44.7
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.9e-105 387.5 632 41.9
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 4.3e-105 386.3 636 43.4
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.3e-105 386.3 626 43.5
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 9.5e-105 385.2 640 42.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 9.5e-105 385.2 628 41.6
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 8.9e-103 378.6 627 43.2
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 9.8e-102 375.2 462 50.0
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.1e-100 371.7 628 42.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 2.4e-100 370.5 545 44.2
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 3.9e-98 363.2 631 39.8
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 6.6e-98 362.5 628 43.2
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.5e-97 361.3 634 40.2
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 5.6e-97 359.4 640 42.3
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 9.2e-92 342.0 542 41.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 2.5e-89 334.0 626 40.1
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 4.7e-88 329.7 638 38.1
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 2.0e-86 324.3 331 52.9
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 3.2e-84 317.0 478 46.0
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-83 315.1 386 60.4
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.2e-80 305.1 454 46.3
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 2.1e-80 304.3 552 40.9
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 5.3e-79 299.7 531 42.4
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 9.0e-79 298.9 353 45.9
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.9e-77 293.9 637 35.8
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.2e-75 288.5 310 50.3
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.6e-75 286.6 588 36.6
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.0e-74 285.4 536 39.7
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 4.3e-73 280.0 301 49.5
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.5e-70 270.0 263 53.2
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 9.9e-70 268.9 447 42.1
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 5.4e-68 263.1 260 51.2
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 4.6e-67 260.0 272 49.6
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 3.0e-66 257.3 621 32.0
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.6e-64 251.5 606 34.2
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.2e-62 245.4 303 45.9
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.5e-62 243.4 232 53.0
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.9e-62 242.3 236 53.4
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 4.9e-61 240.0 213 58.2
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 1.0e-58 232.3 586 32.9
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 1.6e-56 224.9 704 29.5
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 3.8e-53 213.8 385 43.6
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.3e-52 209.1 242 47.5
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.0e-50 204.1 257 49.4
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 1.9e-49 201.4 247 48.6
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.3e-49 200.3 395 41.0
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.4e-47 195.3 238 49.2
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 5.0e-45 186.8 285 42.1
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.5e-45 186.4 178 52.8
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.6e-43 180.6 121 76.9
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 6.7e-42 176.4 152 57.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 5.0e-37 160.2 173 46.8
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.2e-35 155.6 300 34.3
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.7e-35 154.5 173 58.4
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.6e-35 154.1 232 41.4
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.3e-34 151.4 420 34.5
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 3.0e-34 151.0 171 57.9
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 4.4e-33 147.1 313 30.7
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.3e-32 145.6 248 41.5
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.7e-32 145.2 171 39.8
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.3e-32 143.3 149 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.5e-30 138.7 475 30.9
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 6.5e-29 133.3 115 56.5
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 8.5e-29 132.9 129 59.7
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-27 129.0 123 52.8
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.4e-26 125.6 228 36.4
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 1.4e-26 125.6 183 38.8
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 4.4e-25 120.6 205 39.0
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 7.4e-25 119.8 96 60.4
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 6.3e-24 116.7 265 36.6
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.8e-23 115.2 70 82.9
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 3.1e-23 114.4 218 39.9
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 7.0e-23 113.2 287 27.9
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.2e-22 112.5 146 47.3
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-22 112.1 199 35.2
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 1.6e-22 112.1 199 35.2
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 5.9e-22 110.2 208 37.5
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 7.7e-22 109.8 205 34.6
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.7e-21 108.6 90 57.8
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.9e-20 105.1 279 30.5
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 7.2e-20 103.2 198 30.8
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 9.4e-20 102.8 157 41.4
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 2.1e-19 101.7 171 36.8
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 4.0e-18 97.4 182 34.1
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.2e-17 95.9 503 25.2
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.3e-16 92.4 78 52.6
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 4.1e-15 87.4 107 46.7
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-14 85.5 154 36.4
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.7e-13 82.0 114 40.4
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.5e-12 79.0 261 32.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 9.4e-12 76.3 75 48.0
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 1.6e-11 75.5 160 39.4
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 2.1e-11 75.1 241 34.0
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 6.1e-11 73.6 49 75.5
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.8e-10 72.0 74 50.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 4.0e-10 70.9 107 36.4
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.3e-08 65.9 91 38.5
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.7e-08 65.5 49 63.3
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 4.8e-08 63.9 66 50.0
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 2.4e-07 61.6 79 39.2
CAN.G149.33 Capsicum annuum HOM05D001546 ORTHO05D015824 5.4e-07 60.5 69 46.4
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 2.0e-06 58.5 101 37.6
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 4.5e-06 57.4 76 39.5
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 4.5e-06 57.4 76 39.5
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 5.9e-06 57.0 77 37.7


User provided reference genes

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