Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.1e-126 455.7 225 100.0
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.3e-124 448.4 225 97.8
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.4e-122 443.0 225 96.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 2.2e-115 419.1 225 92.0
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.7e-113 410.6 282 76.2
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.1e-106 390.2 227 82.8
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 5.2e-101 371.3 231 79.2
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 6.6e-96 354.4 222 76.1
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 9.5e-95 350.5 222 76.6
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 8.0e-94 347.4 221 75.1
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.1e-93 345.5 225 75.6
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.8e-92 341.3 216 77.3
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.7e-91 338.6 218 74.8
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 8.3e-91 337.4 225 72.9
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.0e-90 334.3 216 72.7
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.8e-89 330.9 215 73.5
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 7.8e-89 330.9 215 73.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 7.8e-89 330.9 216 71.3
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 7.8e-89 330.9 223 72.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.3e-88 330.1 215 73.0
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 2.3e-88 329.3 222 71.6
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 5.0e-88 328.2 225 69.8
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 8.6e-88 327.4 218 72.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 5.6e-87 324.7 231 69.3
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.2e-86 323.6 213 72.3
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 2.3e-85 319.3 216 69.9
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 4.0e-85 318.5 218 70.6
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 5.2e-85 318.2 216 69.4
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.2e-84 317.0 220 69.5
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.5e-84 316.6 216 69.9
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.5e-84 316.6 217 71.9
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 5.8e-84 314.7 225 69.3
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.3e-83 313.5 219 68.5
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 2.9e-83 312.4 225 67.6
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 3.7e-83 312.0 218 69.3
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 3.7e-83 312.0 219 72.6
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 6.4e-83 311.2 216 69.9
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 6.4e-83 311.2 218 68.8
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.9e-82 309.7 223 63.7
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 9.2e-82 307.4 210 70.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.2e-81 307.0 213 69.5
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.2e-81 307.0 213 70.4
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.6e-81 306.6 213 70.0
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 2.1e-81 306.2 217 69.6
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 6.0e-81 304.7 214 65.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 7.8e-81 304.3 217 68.7
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.0e-80 303.9 223 62.3
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.0e-80 303.9 210 70.0
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.3e-80 302.8 221 67.4
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 3.0e-80 302.4 222 62.6
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.9e-80 302.0 213 69.5
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.9e-80 302.0 210 69.5
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 3.9e-80 302.0 221 67.4
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 8.6e-80 300.8 218 67.0
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 8.6e-80 300.8 213 69.0
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.1e-79 300.4 204 72.1
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.5e-79 300.1 210 69.0
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.5e-79 300.1 211 69.2
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 2.5e-79 299.3 213 68.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 3.3e-79 298.9 214 69.2
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 3.3e-79 298.9 219 68.0
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 4.3e-79 298.5 219 67.6
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 4.3e-79 298.5 201 72.1
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 5.6e-79 298.1 217 64.5
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 5.6e-79 298.1 213 68.5
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 5.6e-79 298.1 213 68.5
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 5.6e-79 298.1 226 65.0
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 9.5e-79 297.4 216 63.9
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.6e-78 296.6 210 67.1
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.1e-78 296.2 215 66.5
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.1e-78 296.2 224 65.6
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 2.8e-78 295.8 216 64.4
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 3.6e-78 295.4 227 65.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 4.7e-78 295.0 210 66.7
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 8.1e-78 294.3 213 67.6
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 8.1e-78 294.3 216 66.2
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 8.1e-78 294.3 227 64.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-77 293.9 227 62.6
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.4e-77 293.5 210 66.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 3.1e-77 292.4 204 70.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 5.2e-77 291.6 224 64.3
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 5.2e-77 291.6 224 64.3
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 6.8e-77 291.2 210 68.6
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.2e-76 290.4 224 62.9
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 4.4e-76 288.5 218 65.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 4.4e-76 288.5 213 62.9
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.7e-75 286.6 217 67.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.1e-74 283.9 211 64.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 3.2e-74 282.3 205 66.8
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.1e-74 282.0 212 64.6
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.1e-73 279.6 206 62.1
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.7e-73 279.3 220 63.6
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-72 276.9 211 64.0
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 8.6e-72 274.2 218 62.4
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.1e-71 273.9 213 59.6
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.5e-71 272.7 202 61.9
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 2.5e-71 272.7 214 63.1
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 5.6e-71 271.6 199 68.3
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 9.6e-71 270.8 194 69.6
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-70 270.4 196 68.4
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 1.2e-70 270.4 211 61.6
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.5e-68 263.5 220 62.3
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.0e-68 263.1 212 59.4
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.0e-68 263.1 212 59.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 3.4e-68 262.3 185 70.8
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 3.4e-68 262.3 209 59.3
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 6.4e-67 258.1 211 59.7
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 8.4e-67 257.7 213 56.8
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 3.2e-66 255.8 173 73.4
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 4.2e-66 255.4 218 60.1
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.2e-65 253.8 165 73.9
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.6e-65 253.4 206 57.8
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 3.5e-65 252.3 165 73.9
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.8e-65 251.1 206 57.3
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.0e-64 250.8 165 78.8
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.0e-64 249.2 218 59.6
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.0e-64 249.2 207 60.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.7e-64 247.7 160 73.1
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.9e-61 238.0 167 68.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-60 237.3 207 61.4
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 7.6e-60 234.6 150 76.7
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.1e-58 230.7 169 62.1
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.2e-57 227.3 206 54.9
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 2.7e-57 226.1 164 68.3
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.5e-57 225.7 216 55.1
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.3e-56 223.8 208 52.9
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.3e-56 223.0 220 53.2
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 2.5e-55 219.5 213 50.2
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 2.1e-54 216.5 214 56.5
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.8e-54 215.3 225 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 5.3e-53 211.8 219 47.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.6e-52 209.5 202 50.5
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-51 206.8 216 45.4
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.3e-48 196.4 184 63.6
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-46 190.3 214 52.3
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.1e-45 186.0 152 52.6
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.5e-42 175.3 201 46.8
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 7.9e-41 171.4 216 45.8
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 2.3e-40 169.9 216 39.4
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 3.0e-40 169.5 214 40.2
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 2.1e-38 163.3 104 79.8
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 4.1e-37 159.1 183 44.3
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.1e-37 159.1 109 70.6
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.5e-36 155.6 126 61.9
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 8.4e-35 151.4 96 70.8
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.1e-33 146.7 89 75.3
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.6e-33 145.6 202 39.1
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 4.3e-31 139.0 216 38.0
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 3.7e-30 136.0 216 37.0
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 7.7e-28 128.3 128 46.1
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.0e-24 117.9 90 63.3
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.5e-23 114.0 84 66.7
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 2.0e-23 113.6 91 56.0
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.1e-13 81.3 82 56.1
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.4e-13 80.9 205 33.2
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.2e-12 77.8 92 42.4
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 2.8e-06 56.6 51 58.8
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 8.2e-06 55.1 43 53.5


User provided reference genes

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