Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G2205 Fragaria x ananassa HOM05D013595 ORTHO05D010662 1.7e-58 229.2 117 100.0
FAN22G0690 Fragaria x ananassa HOM05D013595 ORTHO05D010662 6.5e-55 217.2 116 94.0
FAN28G1122 Fragaria x ananassa HOM05D013595 ORTHO05D010662 1.7e-23 112.8 112 55.4
FAN15G0370 Fragaria x ananassa HOM05D013595 ORTHO05D010662 3.0e-23 112.1 109 52.3
FvH4_1g27751 Fragaria vesca HOM05D013595 ORTHO05D010662 3.6e-21 105.1 95 55.8
FvH4_6g49051 Fragaria vesca HOM05D013595 ORTHO05D010662 1.1e-20 103.6 89 53.9
FvH4_1g17621 Fragaria vesca HOM05D000003 ORTHO05D000006 7.0e-17 90.9 94 45.7
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 1.6e-16 89.7 116 44.0
RcHm_v2.0_Chr1g0331041 Rosa chinensis HOM05D013595 ORTHO05D010662 6.6e-15 84.3 90 41.1
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 9.5e-14 80.5 112 38.4
FAN03G0460 Fragaria x ananassa HOM05D008833 ORTHO05D010662 3.6e-13 78.6 116 37.9
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 1.1e-12 77.0 115 35.7
FvH4_4g13701 Fragaria vesca HOM05D013595 ORTHO05D010662 3.1e-12 75.5 103 32.0
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 1.5e-11 73.2 111 36.9
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 2.6e-11 72.4 115 36.5
FAN02G4016 Fragaria x ananassa HOM05D000061 ORTHO05D010662 3.4e-11 72.0 119 35.3
FvH4_3g30011 Fragaria vesca HOM05D008833 ORTHO05D010662 7.5e-11 70.9 112 38.4
FvH4_1g22021 Fragaria vesca HOM05D000003 ORTHO05D000006 9.9e-11 70.5 114 38.6
RcHm_v2.0_Chr4g0413301 Rosa chinensis HOM05D008833 ORTHO05D010662 2.9e-10 68.9 111 36.9
FvH4_4g01641 Fragaria vesca HOM05D000003 ORTHO05D000006 1.4e-09 66.6 92 37.0
RcHm_v2.0_Chr3g0478611 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-09 66.6 112 32.1
FvH4_4g22411 Fragaria vesca HOM05D021063 ORTHO05D010662 2.4e-09 65.9 115 33.9
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 5.4e-09 64.7 116 31.9
FAN05G3804 Fragaria x ananassa HOM05D013134 ORTHO05D010662 9.2e-09 63.9 60 51.7
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-08 63.5 113 34.5
RcHm_v2.0_Chr2g0088901 Rosa chinensis HOM05D013595 ORTHO05D010662 2.1e-08 62.8 91 34.1
FAN28G1633 Fragaria x ananassa HOM05D013134 ORTHO05D010662 3.5e-08 62.0 80 38.8
FAN25G0424 Fragaria x ananassa HOM05D008833 ORTHO05D010662 4.6e-08 61.6 107 33.6
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-08 61.2 110 33.6
FvH4_2g10620 Fragaria vesca HOM05D016052 ORTHO05D045616 6.0e-08 61.2 85 38.8
PSO067G0070 Papaver somniferum HOM05D007979 ORTHO05D008897 6.0e-08 61.2 112 33.9
FvH4_7g03001 Fragaria vesca HOM05D010636 ORTHO05D011274 7.8e-08 60.8 104 33.7
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 1.0e-07 60.5 108 34.3
COL.COLO4_12191 Corchorus olitorius HOM05D008133 ORTHO05D009449 1.0e-07 60.5 113 33.6
FAN27G1597 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.0e-07 60.5 106 34.9
PSO170G0252 Papaver somniferum HOM05D007979 ORTHO05D008897 1.0e-07 60.5 112 33.9
CANSAT25G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-07 60.1 106 32.1
Haze_22248 Corylus avellana HOM05D009031 ORTHO05D024892 1.3e-07 60.1 106 36.8
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 1.7e-07 59.7 108 33.3
FAN14G5071 Fragaria x ananassa HOM05D008833 ORTHO05D010662 1.7e-07 59.7 101 33.7
FAN24G0178 Fragaria x ananassa HOM05D016052 ORTHO05D045616 1.7e-07 59.7 85 37.6
Manes.06G094851 Manihot esculenta HOM05D000003 ORTHO05D000004 2.3e-07 59.3 110 36.4
PSO824G0080 Papaver somniferum HOM05D007979 ORTHO05D008897 2.3e-07 59.3 112 33.0
RcHm_v2.0_Chr5g0047711 Rosa chinensis HOM05D008833 ORTHO05D000167 2.3e-07 59.3 109 33.9
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 58.9 105 35.2
Atru.chr6.885 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-07 58.9 102 32.4
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 58.9 108 34.3
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-07 58.9 108 35.2
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 3.0e-07 58.9 114 32.5
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 3.9e-07 58.5 105 34.3
RcHm_v2.0_Chr2g0122921 Rosa chinensis HOM05D008833 ORTHO05D000167 3.9e-07 58.5 105 32.4
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 3.9e-07 58.5 111 32.4
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-07 58.2 115 30.4
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 5.1e-07 58.2 86 32.6
Manes.07G069794 Manihot esculenta HOM05D000003 ORTHO05D000167 6.6e-07 57.8 110 35.5
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 6.6e-07 57.8 108 33.3
QL12p007586 Quercus lobata HOM05D000003 ORTHO05D000167 6.6e-07 57.8 110 30.0
Atru.chr9.707 Acer truncatum HOM05D000003 ORTHO05D000167 8.6e-07 57.4 115 33.0
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 8.6e-07 57.4 104 31.7
COL.COLO4_30109 Corchorus olitorius HOM05D008133 ORTHO05D009449 8.6e-07 57.4 99 37.4
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 8.6e-07 57.4 116 31.0
PSO017G5341 Papaver somniferum HOM05D000003 ORTHO05D008897 8.6e-07 57.4 112 30.4
PSO170G1352 Papaver somniferum HOM05D000003 ORTHO05D001026 8.6e-07 57.4 110 33.6
RcHm_v2.0_Chr7g0239141 Rosa chinensis HOM05D008833 ORTHO05D010662 1.1e-06 57.0 96 32.3
Sed0018752 Sechium edule HOM05D000003 ORTHO05D000167 1.1e-06 57.0 104 29.8
Haze_11698 Corylus avellana HOM05D009031 ORTHO05D000167 1.5e-06 56.6 100 32.0
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.5e-06 56.6 101 33.7
PSO478G5116 Papaver somniferum HOM05D007979 ORTHO05D008897 1.9e-06 56.2 112 33.0
QL05p053561 Quercus lobata HOM05D000003 ORTHO05D011877 1.9e-06 56.2 108 32.4
CANSAT64G1247 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-06 55.8 108 30.6
CiPaw.15G035300 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.5e-06 55.8 113 25.7
AUR62041129 Chenopodium quinoa HOM05D000003 ORTHO05D000167 2.5e-06 55.8 105 34.3
PSO782G1141 Papaver somniferum HOM05D000003 ORTHO05D008897 2.5e-06 55.8 101 32.7
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 3.3e-06 55.5 102 35.3
ClCG01G013790 Citrullus lanatus HOM05D029821 ORTHO05D000167 3.3e-06 55.5 99 30.3
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 3.3e-06 55.5 113 31.9
QL08p050440 Quercus lobata HOM05D000003 ORTHO05D000167 3.3e-06 55.5 108 31.5
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 3.3e-06 55.5 107 28.0
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 3.3e-06 55.5 113 31.0
TWI75G0036 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.3e-06 55.5 107 29.9
CiPaw.10G104100 Carya illinoinensis HOM05D000003 ORTHO05D000167 4.3e-06 55.1 104 28.8
PSO339G4879 Papaver somniferum HOM05D007979 ORTHO05D008897 4.3e-06 55.1 112 33.0
Sed0002375 Sechium edule HOM05D000003 ORTHO05D000167 4.3e-06 55.1 114 29.8
Ah.11g040540 Amaranthus hybridus HOM05D000003 ORTHO05D008897 5.6e-06 54.7 111 31.5
Haze_23484 Corylus avellana HOM05D062968 ORTHO05D016203 5.6e-06 54.7 71 42.3
FAN12G2709 Fragaria x ananassa HOM05D008833 ORTHO05D019151 5.6e-06 54.7 73 34.2
QL11p000147 Quercus lobata HOM05D000003 ORTHO05D000167 5.6e-06 54.7 95 32.6
Atru.chr3.3369 Acer truncatum HOM05D000003 ORTHO05D000167 7.3e-06 54.3 108 32.4
Ah.03g146990 Amaranthus hybridus HOM05D000003 ORTHO05D008897 7.3e-06 54.3 107 28.0
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-06 54.3 98 33.7
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 7.3e-06 54.3 111 28.8
PSO339G1461 Papaver somniferum HOM05D000003 ORTHO05D008897 7.3e-06 54.3 97 33.0
PSO801G0711 Papaver somniferum HOM05D007979 ORTHO05D008897 7.3e-06 54.3 112 32.1
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-06 53.9 106 33.0
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 9.5e-06 53.9 89 36.0
CANSAT25G3483 Cannabis sativa HOM05D000003 ORTHO05D000167 9.5e-06 53.9 108 30.6
Haze_05735 Corylus avellana HOM05D009031 ORTHO05D000167 9.5e-06 53.9 109 33.9
FAN11G1629 Fragaria x ananassa HOM05D017071 ORTHO05D016300 9.5e-06 53.9 89 34.8
FAN16G0367 Fragaria x ananassa HOM05D008833 ORTHO05D010662 9.5e-06 53.9 96 34.4
Lj1g0027700 Lotus japonicus HOM05D000003 ORTHO05D025264 9.5e-06 53.9 104 30.8
PSO210G4325 Papaver somniferum HOM05D007979 ORTHO05D008897 9.5e-06 53.9 109 29.4
RcHm_v2.0_Chr0c22g0500391 Rosa chinensis HOM05D008833 ORTHO05D000167 9.5e-06 53.9 92 37.0
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 9.5e-06 53.9 92 37.0


User provided reference genes

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